RetrogeneDB ID:
retro_ecab_539
Organism:
Horse ( Equus_caballus )
Location:
20:28812167-28812580 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.14 %
Coverage:
51.67 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_539
AGGCCCTACCGCAGGCAACGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGA
CCACAGTATTCCAACCCTCCTGTGCAAGGAGAAGTGATGGAGGGTGCTGACAACCAGGGT
GCAAGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGTTGTACACCACGATTC
CGCAGGGGCCCTCCTCGCCAAAACAGCCTAGAGAGGATGGCAATGAAGATAAGGAAAATC
AAGAAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATT
ACCTACGCAGACGCCCAGAAATCCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCG
ATCCACCAGCTGAGAATTCCTCCGCTCCCGAGGCTGGGCAGGGCGGGGCTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.1
SRP021940_embryo 0.24
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.13
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQ-RQPREDGNEEDKENQGDETQGQQPPQRRYRRN
RPYRR.RFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA.EQGRPVRQNMYRG..PRFRRGPPRQ..QPREDGN.EDKENQ.DETQGQQPPQRRYRRN
Retrocopy
RPYRRQRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAREQGRPVRQNMYRGCTPRFRRGPPRQ/KQPREDGN-EDKENQEDETQGQQPPQRRYRRN


Parental protein
FNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
FNY.RRRPE.PKPQDGKETKAADPPAENSSAPEA.QGGAE
Retrocopy
FNYLRRRPEIPKPQDGKETKAADPPAENSSAPEAGQGGAE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide