RetrogeneDB ID:
retro_ecab_539
Organism:
Horse ( Equus_caballus )
Location:
20:28812167-28812580 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
92.14 %
Coverage:
51.67 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Genomic region (view in browser)
>retro_ecab_539
AGGCCCTACCGCAGGCAACGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGA
CCACAGTATTCCAACCCTCCTGTGCAAGGAGAAGTGATGGAGGGTGCTGACAACCAGGGT
GCAAGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGTTGTACACCACGATTC
CGCAGGGGCCCTCCTCGCCAAAACAGCCTAGAGAGGATGGCAATGAAGATAAGGAAAATC
AAGAAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATT
ACCTACGCAGACGCCCAGAAATCCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCG
ATCCACCAGCTGAGAATTCCTCCGCTCCCGAGGCTGGGCAGGGCGGGGCTGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.1 |
| SRP021940_embryo | 0.24 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.13 |
| SRP021940_testis | 0.47 |
Parental protein coverage
Changes in the retrocopy sequence
