RetrogeneDB ID:
retro_ecab_54
Organism:
Horse ( Equus_caballus )
Location:
31:5428707-5429532 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.22 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_54
CTAAATGATGATGACTTCAAAACAGCCATCATTAAAATACTCACTGAGTTAAGAGAGAAT
TCTGACCGACAACTCAACGAGTTCAGGAGCTATGTCACAAAAGAGTTTGATACGATAAAG
AAGAACCAAACAGAAATACTGGAAATGAAGAACACAATAGAGGAGGTTAAGAAAAATCTA
GATGCTCTGAACAGTAGGGCCGATAATATGGAGGAAAGAATTAGCAATTTGGAAGATGGC
AATATAGAATTGTTGCAGGAAGAGGAGGAGAGAGAAGCAAGACTTAAAAGAAATGAAGAA
ACTCTCCGAGAATTATCAGACACAATTAGGAGATGCAACGTAAGGATTATAGGTATACCA
GAGGGAGAAGAGAAGGAGAAAGGGGCAGAAAACCTATTCAAAGAAATAATGGCTGAGAAC
TTCCCAAATCTGGTGAGGGAGATGGATCTTCAGGTGACAGAAGCCAATAGATCTCCAAAC
TTTATCAATGCAAGAAGACCAACTCCACGGCATATAGTAGTGAAGCTAGCAAAAGTCAAC
GACAAGGAGAAAATATTAAGGACAGCCAGGCAAAAGAAACTAACCTACAAAGGAACCCCC
ATCAGGCTATCAGCAGATTTCTCAGCAGAAACTTTACAGGCTAGAAGAGAGTGGAATGAT
ATATTCAAAAATCTGAAGGACAAAAACCTACAGCCGAGAATTCTCTACCCAGCGAAAATA
TCCTTCAAATACGATGGAGAAATAAAAACTTTCCCAGATAAACAAAAATTAAGGGAGTTC
ATTGCCACAAAACCTCCTCTTCAGGAAATCCTCAGGAAAACCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EINTIKKNQSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLFK
E..TIKKNQ...LEMKNT..EVKKNL...N.RAD..EE.IS.LED.NIE.LQ.EEERE.RLKRNEE.L.E.S..IR..N.R.IGIPEGEEK.KGAE.LFK
Retrocopy
EFDTIKKNQTEILEMKNTIEEVKKNLDALNSRADNMEERISNLEDGNIELLQEEEEREARLKRNEETLRELSDTIRRCNVRIIGIPEGEEKEKGAENLFK


Parental protein
EIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANKKQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNLQP
EI.A.NFPNL..E...QV.EA.R.PN.I...R..PRHIV.KLAKVNDKEK.LR.A..K....TYKG.PIRLSADFS.ETLQARREW.DIFK.LKDKNLQP
Retrocopy
EIMAENFPNLVREMDLQVTEANRSPNFINARRPTPRHIVVKLAKVNDKEKILRTARQKK--LTYKGTPIRLSADFSAETLQARREWNDIFKNLKDKNLQP


Parental protein
RILYP
RILYP
Retrocopy
RILYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide