RetrogeneDB ID:
retro_ecab_540
Organism:
Horse ( Equus_caballus )
Location:
20:29304064-29304708 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.63 %
Coverage:
96.88 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_540
ATAACTGAACTGGAAAATACATTAGAGGGGTTCAACAGCAGACTGGATGAAGTAGACACA
CAAATCAGTGACCTGGAAAATAAAGCAATGTATCTCACCCAGACAGAGTGGAAAAATGAA
AAAGAATTTTAAAAAGTAGAGATACCTTAAGACACCTCTGGGACAACATCAAGTAGAATA
ATGTTTGCATGATAGGGGTCCCAGGAGGAGAAAAGTCCAGAAAAATTAATTGAATGGCTG
AAAACTTCCCTAATGGGAGAAGGGAAACAGACATCCAGGTTCAGGAAGCCCAGAGAGTTC
CAAACAAGATGAACTCAAAGAGAAACACATCAAGACACATTATAATTAAAATGGTAAAAG
TTAAGGATAAAGAGAGAATCTTAAGAGCAGCTAGAGAAAAAACAACTTATTATGTACAAG
GGAAACCCCAAAAGGCTACCAGCAGATTTTTCAGCAGAAACTTTACAGAACAGAAAGAAG
TGGCATGACATAGTCAATGTGCTGAAAGGAAAAAACTTCCACCAGGAACTCTCTACCCGG
CAAGGTTATCATTCAGAATTGAAGGAGAGATTAAAAGTTTTCCAGATAAGCAAAAGCTAA
AGCAGTTTATCACCATTAAGCCAGCCTTACAAGAAATGTTAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ITEKKSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEK-RIRQNENSLRELWDNIKCANIHVIGVPEERQRGRKLFEEIIAEIFPNLRKETDTQVQE
ITE....L.GFNSR...V...I..L.......T..E.K.EK.RI......LR.LWDNIK..N...IGVP......RK......AE.FPN.R.ETD.QVQE
Retrocopy
ITELENTLEGFNSRLDEVDTQISDLENKAMYLTQTEWKNEK/RILKSRDTLRHLWDNIK*NNVCMIGVPGG-EKSRKI--N*MAENFPNGRRETDIQVQE


Parental protein
AQRVPNKTSPKRPTSRHIIIKMSKIKDKERILKAARE-RQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKV-KEKN-LQPRILYPARLSFTMEGEIKSF
AQRVPNK...KR.TSRHIIIKM.K.KDKERIL.AARE..Q...YKG.P.RL..DFSA.TLQ.R..WHDI..V.K.KN.L.P..LYPARLSF..EGEIKSF
Retrocopy
AQRVPNKMNSKRNTSRHIIIKMVKVKDKERILRAARE\KQLIMYKGNPKRLPADFSAETLQNRKKWHDIVNVLKGKN/LPPGTLYPARLSFRIEGEIKSF


Parental protein
QDKQKLKEFITKKPILQEMLK
.DKQKLK.FIT.KP.LQEMLK
Retrocopy
PDKQKLKQFITIKPALQEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide