RetrogeneDB ID:
retro_ecab_542
Organism:
Horse ( Equus_caballus )
Location:
20:32022012-32022753 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.64 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_542
GCTTGTGTTGAACAAGACAAGCTGAGACAACCATTTGAAGATGCTTCTGAGGTACTGAGT
TAACATCCAACTGGAGATCTTCAGTACTCCCCAGATTACAAAAATTAGCTGGCCTTCGTC
AACTGCTGTTCTCATGTCAGAGGAAATTCCAACTGCTGTGGTGTGCTGCCTGTAGAGGAA
CCTATCTATAACAGGAGGACAGTAATAAACAGTGCTTCACACCCCTATTTTGAAGGAAAT
ATTCATCAATCTCTGCAGAACATCCCTGAAAACCAGAGAGTACAACCTGCCGTTCTCCAG
CAAAAGGGAGGAAAAGGCACGAAGAAGCTCCGACTGTTTGAATACCTTCATGAGTCCCTG
TGTAATCCTGAGATGGCATCTTGTATTTAGTGGGTAGATAAAAACAGAGACATCTTGCAG
TTTATATCAAAGAACAAAGAAAAACTTGCCCAACTTTGGGGAAAAAGAAAAGGCAACCAA
AAGACCGTGGCTTATCAGAAAATGGCCAGAGCACTGAGGAATTATGGAAAAACTGGGGAA
ATCACCAAAATCCGGAGAAAGCTAACTTACCAATTCAGTGAGGTCATTCTCCAAAGACAC
TCTCCATCTTATTTCTTGGGAAAAGAGATTGTCTACTCACAGTATGTTCAACCTGATCAA
GGATAGCTCAGTTTAAATAACTGGAATGCAAATTATAATTATACATGTGCAAATTACCCT
GAGCTAAGTCACCCTGATTGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ACVEQDKLGQAFEDAFEVLRQHSTGDLQYPPDYKNYLAFINHC-HVRGNSSCCAVLPVEEPVYNWRTVINSAADLYFEGNIHQSLQNIPENQLVQPAVLQ
ACVEQDKL.Q.FEDA.EVL..H.TGDLQY.PDYKN.LAF.N.C.HVRGNS.CC.VLPVEEP.YN.RTVINSA...YFEGNIHQSLQNIPENQ.VQPAVLQ
Retrocopy
ACVEQDKLRQPFEDASEVLS*HPTGDLQYSPDYKN*LAFVNCCSHVRGNSNCCGVLPVEEPIYNRRTVINSASHPYFEGNIHQSLQNIPENQRVQPAVLQ


Parental protein
QKGGKGRKKLRLFEYLHESLYNPEMASCIQWVDKNRGIFQFISKNKEKLAQLWGKRKGNRKTMTYQKMARALRNYGRTGEITKIRRKLTYQFSEVILQRL
QKGGKG.KKLRLFEYLHESL.NPEMASCI.WVDKNR.I.QFISKNKEKLAQLWGKRKGN.KT..YQKMARALRNYG.TGEITKIRRKLTYQFSEVILQR.
Retrocopy
QKGGKGTKKLRLFEYLHESLCNPEMASCI*WVDKNRDILQFISKNKEKLAQLWGKRKGNQKTVAYQKMARALRNYGKTGEITKIRRKLTYQFSEVILQRH


Parental protein
SPSYFLEKEIFYSQYVQPDQGYLSLNNWNANYNYTYANYPELSHPDC
SPSYFL.KEI.YSQYVQPDQG.LSLNNWNANYNYT.ANYPELSHPDC
Retrocopy
SPSYFLGKEIVYSQYVQPDQG*LSLNNWNANYNYTCANYPELSHPDC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide