RetrogeneDB ID:
retro_ecab_543
Organism:
Horse ( Equus_caballus )
Location:
20:39478893-39479207 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.58 %
Coverage:
99.06 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_543
GTGGTGAATGTTCCTAAAACTCACCAGACTTTCTGTCAGAAGTGTGGCAAACAGCAACCC
CACACAGTGACACAGTACAAGAAGGGCAAGGATTCTCTGTACACCCAGGGAAAGCGGTGC
TATAACTGGAAGCAGGCTGGCTACAGTGGACAGACTAAGCTGATTTCCAGAGAAAAGCTA
AAACTACAAAGAAGGTTGTACTGAGGTTTGAATGAATTCAGCCCAACTGCAGAGCTAAGA
GACTTCAGGCTATGAAGAGATGCAAACATTTTGAACTGGGAGGATTTAAGAAGAAAAAGG
GGCAGGGTATTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPI-FRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKR
.VNVPKT..TFC.KCGK.QPH.VTQYKKGKDSLY.QGKR.Y..KQ.GY.GQTK.I.F..KAKTTKK.VLR.E...PNCR.KR..A.KRCKHFELGG.KK.
Retrocopy
VVNVPKTHQTFCQKCGKQQPHTVTQYKKGKDSLYTQGKRCYNWKQAGYSGQTKLI/FQRKAKTTKKVVLRFE*IQPNCRAKRLQAMKRCKHFELGGFKKK


Parental protein
KGQVIQ
KGQ.IQ
Retrocopy
KGQGIQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide