RetrogeneDB ID:
retro_ecab_544
Organism:
Horse ( Equus_caballus )
Location:
20:53967269-53967726 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.65 %
Coverage:
52.04 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
NPM1
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]

Genomic region (view in browser)





>retro_ecab_544
AACATGAGCCCACTGAGGCCCCAGAACTATCTTTTCGGTTGGGAACTAAAGGCCAACAAA
GATTATTATGTCAGGTGGAAAATGATGAAAATAAGCACCAGTTATCTTTCAGAACTGTCA
GTTATGGGCCGGCGCACAGGATGAACTCCATATTGTTGAAGCAGGGGCAAAGAGTTACGA
AGGCAGCCCAATTAAAGTAACACTGGCAATTTGGAAAATGTCTGTACAGCCAATGGTTTC
CCTTGGGGGCTTTGAAATAACACCATCTATGGTCTTACAGCTGAAGTGTGGTTCAGGGCC
TGTGCATATTAGTGCACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGGAGATGA
AGAGGAGGAGGATGGGAAACTCTTAAGCATATCTGGAAGGTGATCTGCTCCTGGAAGTGG
TAGCGAGGTTCCAGAGAAGAAAGCTAAACTTGCTGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DMSPLRPQNYLFGCELKADKDYHFK-VDNDENEHQLSLRTVSLG-AGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCG
.MSPLRPQNYLFG.ELKA.KDY....V.NDEN.HQLS.RTVS.G.AGA.DELHIVEA.A..YEGSPIKVTLA..KMSVQP.VSLGGFEITP..VL.LKCG
Retrocopy
NMSPLRPQNYLFGWELKANKDYYVR/VENDENKHQLSFRTVSYG/AGAQDELHIVEAGAKSYEGSPIKVTLAIWKMSVQPMVSLGGFEITPSMVLQLKCG


Parental protein
SGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGSGSKVPQKKVKLAA
SGPVHIS.QHLVAVEEDAES.DEEEED.KLLSISG..SAPGSGS.VP.KK.KLAA
Retrocopy
SGPVHISAQHLVAVEEDAESGDEEEEDGKLLSISGR*SAPGSGSEVPEKKAKLAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide