RetrogeneDB ID:
retro_ecab_545
Organism:
Horse ( Equus_caballus )
Location:
20:2849058-2849516 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.95 %
Coverage:
76.88 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_545
GAAGAGAGGGAGAGGGGGAAGAGAGTTTACTTAAAGAATTAAGAGCTGAAAACTTTCCAA
ACTTGGGGAAGGACTTTGACATGCAAGTTCACAAAGCTAATAGAACACCCTATTATTTCA
GTGCACAAACACCTTTTCCAAGACACATTATAATGAAACTGTCAAAAATCAATGATAAAG
AAAAAAATCTTGAAGGCAACCAGGAGTATAAGACAGTAATCTACAAAGGAATCCCCATTA
GGTATCAGTGGATTTCTCAGCAGAAACCCTATAGGCCAGGAGAGCGGAATGACATATTCA
AAGTGTTGAAAGATATAAATTGCCAGCCAAGAATACTTTATCTGGCAAAGTTATCCTTCA
GGTATGGAAGGGAAATTAATACTTTCCCAGACACATAAAAGCTGAGGGAGTTCACCACCA
CTAGACCTGCCTTGAAAGAAATGCTCAAAGGACTTCTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EERQNRR-ESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFSQTVQTRREWNDI
EER.....ESL.KE...ENF.NLGK....QV..ANRTP.Y.....P.PRHI..KL.K...KE.........K...YKG.PIR......Q......E.NDI
Retrocopy
EERERGK/ESLLKELRAENFPNLGKDFDMQVHKANRTPYYFSAQTPFPRHIIMKLSKINDKEKNLEGNQEYKTVIYKGIPIRYQWISQQKPYRPGERNDI


Parental protein
IKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
.K.LK..N..PRILY..KLSFRYGREI..F.D..KLREF.TTRP.L.EM.K..L
Retrocopy
FKVLKDINCQPRILYLAKLSFRYGREINTFPDT*KLREFTTTRPALKEMLKGLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide