RetrogeneDB ID:
retro_ecab_546
Organism:
Horse ( Equus_caballus )
Location:
20:16891410-16891921 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.45 %
Coverage:
51.65 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_546
AAGGTCATCCATGATAACTTTGGCAATGTGGAGGAACTTGTGACCACGGTCCATGCCATC
ACTGCCACCCGGGAGACTGTGGATGGCTCCTCTGGGAAGGTATGGCGTGATGGCCAAGGG
GCTGCCAGAACACGATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCGAGTTCATCC
TTGAGTGGAATGGGAAGCTCACTGGCTGGTCTTCCATGTCTCCATCCCCAATATGTCAGT
CATAGATCTGATCTGCCATCTAGTGAAAGCTGCCAAATATGATGACGTTAAGAAGGTGGT
GAAGCAGGGATCAGAGGGCCCCTAAAGGGCATCCTAGGCTACAATGAGCACCGGGTTGTC
TCTTGCAATGTTAACAGTGACATCACTCTTCCACCTTTGATGCTGGGGCTGGCATTGCCC
TCAACGACAATCTGTCAAGCTCACTTCCTGATATGATAATGAATTTGGCTACAGCAACAG
GGCAATGGACCTTATGGTCCACGTGACCTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAA-QNIIPASTGAAKAVGKVIPELNGKLTG-MAFRVPTPNVSVVDLTCRLEKAAKYDEIK
KVIHD.FG.VE.L.TTVHAITAT..TVDG.SGK.WRDG.GAA.QN.IPASTGAAKAVG..I.E.NGKLTG...F.V..PN.SV.DL.C.L.KAAKYD..K
Retrocopy
KVIHDNFGNVEELVTTVHAITATRETVDGSSGKVWRDGQGAA/QNTIPASTGAAKAVGEFILEWNGKLTG/LVFHVSIPNMSVIDLICHLVKAAKYDDVK


Parental protein
KVVKQASE-GPLKGILGYTEDQVVSCDFNSDT-HSSTFDAGAGIALNDHF-VKLISWYDNEFGYSNRVVDLMAHMAS
KVVKQ.SE.GPLKGILGY.E..VVSC..NSD..HSSTFDAGAGIALND...VKL.S.YDNEFGYSNR..DLM.H..S
Retrocopy
KVVKQGSE/GPLKGILGYNEHRVVSCNVNSDI/HSSTFDAGAGIALNDNL/VKLTS*YDNEFGYSNRAMDLMVHVTS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide