RetrogeneDB ID:
retro_ecab_547
Organism:
Horse ( Equus_caballus )
Location:
20:19100391-19101594 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
94.01 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
RBM17
Parental gene aliases:
No gene alias available
Parental gene description:
RNA binding motif protein 17 [Source:HGNC Symbol;Acc:16944]
Genomic region (view in browser)
>retro_ecab_547
ATGTCCCTGTATGACGACCTGGGAGTGGAGACCAGTGACTCGAAAACAGAAGGCTGGTCC
AAAAACTTCACACTTCTGCAGTCTCAGCTTCAGGTGAAGAGGGCAGCTCTCACTCAGGCA
AAGAGCCAGAGGACAAAACAAAGTACAGTCCTCGCCCCAGTCATCGACCTAAAGCGAGGT
GGCTCTTCAGACGACCGGCAGATCGTGGACACCCCGCCGCACGTAGCCGCCGGCCTGAAG
GATCCTGTTCCCAGTGGATTTTCTGCAGGAGAAGTTCTGATTCCTTTAGCTGATGAATAT
GATCCTAGGTTTCCTAATGATTATGAGAAAGTAGTGAAGCGCCAAAGAGAAGAACGACAG
AGACAGCGGGAGCTGGAAAGACAAAAAGAAATAGAAGAGAGAGAAAAGAGGCGTAAAGAC
AGACATGAAGCTAGTGGGTTTTCAAGGCGAACAGATCCAGATTCTGATGAAGATGAAGAT
TATGAGCGAGAGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATCACACCACCCACTTCT
CTTGTAGAGAAAGACAAAGAGTTACCCCGAGATTTTCCACATGAAGAGGATTCAAGACCT
CGCTCACAGTCTTCCAAAGCTGGTATCCCTCCCCCGGTGTACGAGGAGCAAGACAAACCC
CGATCTCCGACCGGACCTGGCAACTCCTTCCTTGCCAACATGGGTGGCACAGTAGCACAT
AAAATCATGCAGAAGTATGGCTTCCGGGAAGGCCAGGGTCTTGGGAAGCACGAGCAAGGG
CTGAGCATGGCGTTGTCAGTGGAGAAGACAAGCAAGCGAGGCGGCAAGATCATTGTGGGC
GACGCCACGGAGAAAGATGCAGCCAAGAAGTCGGATTCAAATCCACTGACTGAAATACTG
AAGTGTCCTACTAAAGTGGTCCTACTAAGGAACATGGTTGGTGCAGGAGAGGTAGATGAA
GACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTG
ATATTTGAAATTCTTGGTGCCCCTGATGATGAAGCAGTACGAATATTTTTAGAATTTGAA
AGAGTTGAATCAGCAATTAAAGCTGTTGTTGATCTGAACGGGAGGTATTTTGGTGGACGG
GTGGTAAAAGCATGTTTCTACAATTTGGATAAATTCAGGGTCTTGGATTTGGCGGAACAA
GTT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 1.39 |
| SRP021940_cerebellum | 0.5 |
| SRP021940_embryo | 0.93 |
| SRP021940_placental_villous | 0.58 |
| SRP021940_synovial_membrane | 0.99 |
| SRP021940_testis | 1.31 |
Parental protein coverage
Changes in the retrocopy sequence
