RetrogeneDB ID:
retro_ecab_548
Organism:
Horse ( Equus_caballus )
Location:
20:21419381-21419705 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.3 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ATP5J
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 [Source:HGNC Symbol;Acc:847]

Genomic region (view in browser)





>retro_ecab_548
ATGATCGTTCAGACGCTGTTCAAGTTCTTCTCTGTCGTTCAGTCTGCAACCTCAGTGCAT
TTGCAGAGGAACGTTGGTGTCACAGCAGTGGCATTTAATAAGGAACTTGATCTTTTACAG
GAGTTCTTTGTGGACAAGATTAGAGAATACAAATCTAAGGGATGGGTTTCTGGAGGACCT
GTTGAGATTGGCCCGGAGTATCAGCAAGCGCTCGAGAGGGAGCTTTTTAAGTTTAAGCAA
ATATACGGTAAAGCAAAGATGACTGTGTTCCCTAACTTTATATTTGAAGATCCTGATTTT
GAAATGATGGGAAAACCCCAGTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MILRRLFRLSSVVQSAISVHLRRNIGVTAVAF-KELDPIQKLFVDKIREYRTKRQTSGGPVDIGPEYQQDLERELFKLKQMYGKADMNTFPNFKFEDPKF
MI...LF...SVVQSA.SVHL.RN.GVTAVAF.KELD..Q..FVDKIREY..K...SGGPV.IGPEYQQ.LERELFK.KQ.YGKA.M..FPNF.FEDP.F
Retrocopy
MIVQTLFKFFSVVQSATSVHLQRNVGVTAVAFNKELDLLQEFFVDKIREYKSKGWVSGGPVEIGPEYQQALERELFKFKQIYGKAKMTVFPNFIFEDPDF


Parental protein
EVFDKPQS
E...KPQS
Retrocopy
EMMGKPQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide