RetrogeneDB ID:
retro_ecab_55
Organism:
Horse ( Equus_caballus )
Location:
16:26120170-26121430 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.28 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_55
ATGAACGTTCACTGTGGCAGTGAGAGTGACAGGTTCCTGCGGCCAGAGGCCAGCTGCCTG
ATGGATGAAACCTCAGCTGCAGCCCAAGAAAAAGAAACAAATAATCTGACTTCTTCTGGT
CTTCAAACCCTTGCTTATCCTCTAGGTCCCAGGAATGATGACCTTTCACTCGACCCTGCA
TCTCAGCCAGCAAATCTTCAGTTCCCGCACGTAATGCCACTTCCCGAAGACATCAAAGGC
TCTTGCTTACAGAGTGGGAATAAGCGTAACCATGACCCCTTTCTTGCTCCAGAACGATTT
GGAAACAGCACTGTGGGCTTTGGCAGTAATGTTCATTCCCAGGCACCAGAGAAAGTGACT
CTTCTCGTAGATGGCACACGTTTTGTTGTGAATCCACAAATTTTCACTGCTCATCCAGAT
ACCATGTTGGGAAGGATGTTTGGACCAGGAAGAGAGTACAACTTCACGCGGCCCAACGAG
AAGGGGGAGTATGAGATTGCTGAAGGAATCAGTGCAGCTGTGTTTCAAACGGTGCTGGAT
TATTACAAAACTGGTATCATCAATTGTCCTGATGGCATCTCTATCCCAGACCTTAGAGAC
ACGTGCGATTATCTCTGCATTAACTTTGACTTCAACACTATCCGATGTCAGGATCTGAGT
GCTTTACTGCATGAACTGTCTAACGACGGTGCTCACAAGCAGTTTGATCACTACCTCGAA
GAGCTGATCCTGCCCATCATGGTGGGCTGTGCCAAGAAGGGTGAGCGCGAGTGCCATATC
GTTGTGCTGACAGATGAGGATTCTGTGGACTGGGATGAAGACCACCCCCCACCCATGGGG
GAGGAATATTCCCAAATTCTTTACAGCTCTAAGCTCTACAGATTCTTCAAGTACATTGAG
AATCGGGATGTCGCCAAAACAGTGTTAAAGGAGCGGGGCCTGAAAAACATTCGCATTGGA
ATTGAAGGTTACCCTACCTGTAAAGAAAAAATTAAGAGAAGACCTGGTGGCCGATCTGAA
GTAATCTATAATTATGTGCAGCGCCCCTTTATCCAGATGTCGTGGGAAAAGGAAGAAGGA
AAGAGTCGCCATGTGGATTTCCAGTGTGTTCGAAGCAAATCCCTCACTAATCTGGTAGCT
GCTGGAGAAGACGTCTTAGAGGACCAGGAGATACTAATGTACCACCCACCCCAAGTGGAT
GAACTTGACCGGCTAAATGCCCCACTTTCTCAGATGGCCTCTAATGACTTTCAGGATTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNVHCGSESDRFLRPEASCLMDETSAAAQEKETNNLTSSGLQTLAYPLGPRNDDLSLDPASQPANLQFPHVMPLPEDIKGSCFQSGNKRNHDPFLAPERF
MNVHCGSESDRFLRPEASCLMDETSAAAQEKETNNLTSSGLQTLAYPLGPRNDDLSLDPASQPANLQFPHVMPLPEDIKGSC.QSGNKRNHDPFLAPERF
Retrocopy
MNVHCGSESDRFLRPEASCLMDETSAAAQEKETNNLTSSGLQTLAYPLGPRNDDLSLDPASQPANLQFPHVMPLPEDIKGSCLQSGNKRNHDPFLAPERF


Parental protein
GNSTVGFGSNVHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAAVFRTVLDYYKTGIINCPDGISIPDLRD
GNSTVGFGSNVHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAAVF.TVLDYYKTGIINCPDGISIPDLRD
Retrocopy
GNSTVGFGSNVHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAAVFQTVLDYYKTGIINCPDGISIPDLRD


Parental protein
TCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
TCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE
Retrocopy
TCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIE


Parental protein
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEVLMYHPPQVD
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQE.LMYHPPQVD
Retrocopy
NRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMYHPPQVD


Parental protein
ELDRLNAPLSQMASNDFQD
ELDRLNAPLSQMASNDFQD
Retrocopy
ELDRLNAPLSQMASNDFQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide