RetrogeneDB ID:
retro_ecab_550
Organism:
Horse ( Equus_caballus )
Location:
20:24174982-24175259 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.68 %
Coverage:
76.61 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
HINT1
Parental gene aliases:
No gene alias available
Parental gene description:
histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912]

Genomic region (view in browser)





>retro_ecab_550
AAGGAAATCCAGCCAAAATCATTTTTGAGGATGACTGATGTCTCATTTCCATGACATTTC
CCCTCAAATACCAACATATTTTCTGGTGATACGCAAGTAAACGTGTATCCCAGATATCCG
TAGCAGATGATGAGGAAAGCCGTGGACATTTAATGATTGTTGACAAGAAATGTGCTGCTG
ATCTGGGCCTGAGGAAGGGTTATGAAGAGCAGTGAATGAGGGTTCAGATGGGAGACAATC
TGTCACATTCATCTCCATGTTCTTGGAGGCGGGCAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KESQPK-IIFEDDQCLA-FHDISPQAPTHFLVIPK-KHISQISVAEDDDESLLGHLMIVGKKCAADLGLKKGYR-MVVNEGSDGGQSVYHVHLHVLGGR
KE.QPK.IIFEDD.CL..FHDISPQ.PT.FLVI.K.K..SQISVA..DDE...GHLMIV.KKCAADLGL.KGY....VNEGSDG.QSV.........GR
Retrocopy
KEIQPK/IIFEDD*CLI/FHDISPQIPTYFLVIRK\KRVSQISVA--DDEESRGHLMIVDKKCAADLGLRKGYE/RAVNEGSDGRQSVTFISMFLEAGR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide