RetrogeneDB ID:
retro_ecab_551
Organism:
Horse ( Equus_caballus )
Location:
20:24191912-24192906 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.27 %
Coverage:
95.66 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
C4orf27
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 4 open reading frame 27 [Source:HGNC Symbol;Acc:26051]

Genomic region (view in browser)





>retro_ecab_551
GAAGCACAGCGGTGTGAAAACACGGTTGATGGTGAAGAAGAGTAAATCCTGTGAAGCTGA
TATCTCCAATGACTTCAAAAAGAGTAGGAAACCATTATAAGCTTTCTCTGCTTGAAGATT
TCTATTGCTTCTCAAAGTTCTGTGAAGAACTTGACCCTGAGAAAACAGTTGATCCACTTT
CCCAAAGCCTTGGACTTCGATTAATGGGTCCTTCTGATGATATCCTTGCTGGAAAACATA
AAATGAAGAAAAAAATAGCAAGTTTGAATTTTAGCCTTAACTGGAGATATCACTAGGATA
CTCCTGAATTCCAGACCATTATTATTAGAGATAATAAAATTCATCACCACATAGCATATT
TCAGGGATTTTTCTAGTGAACTTCCTGGATATGTTGGTATAAATAAAGCAAAGAAAAAAG
GTATAATTATTGAAAATGGGGATAATGTGTTTGCTTCAGTTAAATTATTTTTGATGAAGA
AACTTAAAGAAATAACAGATAAAAAGAAAACTAGTCTCTTGAAAAACACAGACGAAAAAC
TCACAGAAGCAGCTAGAGAACTGGGATGCTCACTGGAACCGAGAACCATGAAGATGAAAC
AGAGAGATAAGAAAGTTGTGACGAAGACCTTTCGTGGTGCAGGCTTGATTATCCCAGTAG
ATAAAAATGATGTTGGGTACAGAGAGCTCCCTGAAACAGATGCCAACCTCAAGAGAATTT
GCAAGACAACTGTTGAGGCAGCAAGTGATGAGGAGAGACTAACAGCTTTTGCTCCCATTC
AGGAGGTGATGATTTTTGTGCATTTTGCTAATGATGAATGTGATTATGGCATGGGGCTTG
AGGTGGGAATGGACCTCTTTTGCTATAGTTCGCACTATTTTCGTAAAGTTGCTGGCCAGG
TTTTACCTCTTGTATGTAATGTGTTGAAGAGGAATTTCTTGCAGAAATTATTCAAGATCA
TCTGGCAAACAGAAGGAAAGAGAACGTGGACCAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EGPQCEKTVD-VKKSKSCEADVSSD-LRKE-VENHYKLSLPEDFYHFWKFCEELDPEKPADSLSASLGLRLVGPYD-LLAGKHKMKKKSASLNFNLHWRF
E...CE.TVD.VKKSKSCEAD.S.D.L.KE.V.NHYKLSL.EDFY.F.KFCEELDPEK..D.LS.SLGLRL.GP.D..LAGKHKMKKK.ASLNF.L.WR.
Retrocopy
EAQRCENTVD\VKKSKSCEADISND/LQKE/VGNHYKLSLLEDFYCFSKFCEELDPEKTVDPLSQSLGLRLMGPSDDILAGKHKMKKKIASLNFSLNWRY


Parental protein
YYDPPEFQTIIIGDDKTQFHMGYFRDSPDELPVYVGTNEAKKNCIIVQNGDNVFAAVKLFLMKKLKEVTDKKKTSLLKNIDEKLTAAARELGYSLEQRTM
..D.PEFQTIII.D.K...H..YFRD...ELP.YVG.N.AKK..II..NGDNVFA.VKLFLMKKLKE.TDKKKTSLLKN.DEKLT.AARELG.SLE.RTM
Retrocopy
H*DTPEFQTIIIRDNKIHHHIAYFRDFSSELPGYVGINKAKKKGIIIENGDNVFASVKLFLMKKLKEITDKKKTSLLKNTDEKLTEAARELGCSLEPRTM


Parental protein
KMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRELPETDANLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCYGSHYFHKV
KMKQRDKKVVTKTF.GAGL..PVDKNDVGYRELPETDANLKRICKT.VEAASDEERL.AFAPIQE.M.FV.FANDECDYGMGLE.GMDLFCY.SHYF.KV
Retrocopy
KMKQRDKKVVTKTFRGAGLIIPVDKNDVGYRELPETDANLKRICKTTVEAASDEERLTAFAPIQEVMIFVHFANDECDYGMGLEVGMDLFCYSSHYFRKV


Parental protein
AGQLLPLAYNLLKRN-LFAEIIEDHLANRSKENIDQ
AGQ.LPL..N.LKRN...AEII.DHLANR.KEN.DQ
Retrocopy
AGQVLPLVCNVLKRN/FLAEIIQDHLANRRKENVDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide