RetrogeneDB ID:
retro_ecab_552
Organism:
Horse ( Equus_caballus )
Location:
20:26088363-26088576 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.69 %
Coverage:
77.17 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_552
CTCAGGAAAATGGTGAAGAAAATTGAAATCAGCCGTCACGCCATGTACACTTGTTCCTTC
TGTGGCAAAACCAAGAGGAAGAGACGGGCTGTGGGGATCTGCCACTGTGGTTCCTGCATG
AAAACGGCAGCTGGTGTCACCTTGACCTGCAATCCCTCTTCTGCAGTCACAGCAAAGTCT
GCCATCAGAAGACTGAAGGAACTGACAGACCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 2.79

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
LRKMVKKIEIS.HA.YTCSFCGKTK.KRRAVGI.HCGSCMKT.AG...T.N..SAVT.KSAIRRLKEL.DQ
Retrocopy
LRKMVKKIEISRHAMYTCSFCGKTKRKRRAVGICHCGSCMKTAAGVTLTCNPSSAVTAKSAIRRLKELTDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide