RetrogeneDB ID:
retro_ecab_553
Organism:
Horse ( Equus_caballus )
Location:
20:31585319-31585608 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.0 %
Coverage:
98.99 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_553
CTCTGTGAGGCAGAGGTGGAAGGGACACGAAGCGACTTCAGAGCCAGAAAGGAGAGCAGG
GAATCATCATGGTGAACACAGGCATTCCCATCAAGATCACCATGGACGATCCCTCCACCA
CACAGTTCACCAGCCTCACGCACAACTTCATCTTGAAGGCCTGGAGCACCATTGCGAAAT
TGACCCCCAGAAGGACCTCATCTTCCTTCCAATTCACTCCAAGAAAAATGAAATTATAGT
TGCACCAGATAAAGACTATTTCCTGATTGTGGTTCAGAATCTGACTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LWQAEVEET-LKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVR-EIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNPTE
L..AEVE.T..KRLQSQKG.QGII.VNT.GIPIK.TMD.P.TTQ...L.HNFILKA.ST...EIDPQ.DL.FL.I.SKKNEI.VAPDKDYFLIV.QN.TE
Retrocopy
LCEAEVEGT/TKRLQSQKGEQGIIMVNT-GIPIKITMDDPSTTQFTSLTHNFILKAWSTIA/EIDPQKDLIFLPIHSKKNEIIVAPDKDYFLIVVQNLTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide