RetrogeneDB ID:
retro_ecab_554
Organism:
Horse ( Equus_caballus )
Location:
20:32126104-32126710 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.04 %
Coverage:
79.53 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TSPAN17
Parental gene aliases:
No gene alias available
Parental gene description:
tetraspanin 17 [Source:HGNC Symbol;Acc:13594]

Genomic region (view in browser)





>retro_ecab_554
TTTGTAGTAGTAGGAGGCATCATGTCTGTGCTGGGCTTTGCCGGCTGCAGAGGGGCTCTC
CAGGAGAACACCTGCCTGCTCAAGTTTTTCTCCGTGTTTCTTGGCCTCATCTTCTTCCTG
GAGCTGGCGACAGGGATCCTGGCCTTTGTCTTCAAGGACTGGATTCGAGACCAGCTCCAC
CTCTTCATCAACAACAACGTCAAGGCCTATCGGGACGACATTGACCTCCAGAACCTCATT
GACTTTGCTCAAGAATACTGGTCTTGCTGCAGAGCCCGAGGGCCCAACGACTGGAACCTC
AATATCTACTTCAACTGCACTGACTTGAACCCGAGCCGGGAGCGCTGCAGGGTGCCCTTC
TCTTGCTGCGTCAGGGACCCTGCGGAAGATGTCCTCAACACCCAGTGTGGCTACGATGTC
TGGCTCAAACTGGAGCTGGAGCAGCAGGGCTCTATCCACACCAAAGGCTGCGTGGGCCAG
TTCGAGAAGTGGCTGCAGGACAACCTGATCGTCGTGGCTGGGGTCTTTGTGGGCATCGCC
CTCTTCCAGATCTTCGGTATCTGCCTGGCCCAGAACCTCGTGAGCGACATCAAGGCAGTG
AAGGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FVVVGGIMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKAYRDDIDLQNLIDFAQEYWSCCGARGPNDWNL
FVVVGGIMSVLGFAGC.GAL.ENT.LLKFFSVFLGLIFFLELATGILAFVFKDWIRDQL.LFINNNVKAYRDDIDLQNLIDFAQEYWSCC.ARGPNDWNL
Retrocopy
FVVVGGIMSVLGFAGCRGALQENTCLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLHLFINNNVKAYRDDIDLQNLIDFAQEYWSCCRARGPNDWNL


Parental protein
NIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDVRLKLELEQQGSIHTKGCVGQFEKWLQDNLIVVAGVFVGIALLQIFGICLAQNLVSDIKAV
NIYFNCTDLNPSRERC.VPFSCCVRDPAEDVLNTQCGYDV.LKLELEQQGSIHTKGCVGQFEKWLQDNLIVVAGVFVGIAL.QIFGICLAQNLVSDIKAV
Retrocopy
NIYFNCTDLNPSRERCRVPFSCCVRDPAEDVLNTQCGYDVWLKLELEQQGSIHTKGCVGQFEKWLQDNLIVVAGVFVGIALFQIFGICLAQNLVSDIKAV


Parental protein
KA
KA
Retrocopy
KA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide