RetrogeneDB ID:
retro_ecab_555
Organism:
Horse ( Equus_caballus )
Location:
20:35025869-35026331 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
96.75 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
C10orf82
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 10 open reading frame 82 [Source:HGNC Symbol;Acc:28500]

Genomic region (view in browser)





>retro_ecab_555
ATGGAGTCTTCCAAGACCTTCATGAGACAGCTGCCAATCACACCAGGCTACAGTGGCTTC
GTGCCATACCTTAGCTGCGAGGGAACCTCCAGCAAGGACAACATGTCCCACTGTCTGAAA
ACCTTCCAGGAGATCACACAGCGATATAAAGACCAGAGGGAGGAATTTCACTGCTCGGTC
GCCGCTGCCCCAAAACTGAAGCCCATCTGCTCTGAGGAGACGGTCCTGCGGGCCCTGCAC
CAGTACGAACGGCAGTACCACCCCACGAGTCTGGAATGCAAGTACATAAAGAAACCTCTC
CAGGAGCCTCCGATCCCTGGCTGGGCGGGCTACCTGCCGAGAGCCAGGGTCACTGAATTA
GGCTGCGCCACACGGTACACTGTCATGGCCAGAAATTGCTACAAGGACTTCCTGGACATC
ACAGAGCAGGCCAAGAGAGTGCACCTGAAGCCATATGAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.1
SRP021940_embryo 0.1
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MESSKTFMRQLPITPGYCGFVPYLSCEGTSSENNMSHCLKTFQEITQRYKDQLEEFHCSVAAAPKLKPICSEETVLRALHQYERQYHPTSLECKYVKKPL
MESSKTFMRQLPITPGY.GFVPYLSCEGTSS..NMSHCLKTFQEITQRYKDQ.EEFHCSVAAAPKLKPICSEETVLRALHQYERQYHPTSLECKY.KKPL
Retrocopy
MESSKTFMRQLPITPGYSGFVPYLSCEGTSSKDNMSHCLKTFQEITQRYKDQREEFHCSVAAAPKLKPICSEETVLRALHQYERQYHPTSLECKYIKKPL


Parental protein
QEPPIPGWAGYLPRARVTELGCATRYTVMARNCYKDFLDITEQAKRVHLKPYEE
QEPPIPGWAGYLPRARVTELGCATRYTVMARNCYKDFLDITEQAKRVHLKPYEE
Retrocopy
QEPPIPGWAGYLPRARVTELGCATRYTVMARNCYKDFLDITEQAKRVHLKPYEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide