RetrogeneDB ID:
retro_ecab_556
Organism:
Horse ( Equus_caballus )
Location:
20:37146915-37147198 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.82 %
Coverage:
55.23 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
TM2D1
Parental gene aliases:
No gene alias available
Parental gene description:
TM2 domain containing 1 [Source:HGNC Symbol;Acc:24142]

Genomic region (view in browser)





>retro_ecab_556
CATCTGATTGGAAATAAAGTTCATTTTCTCAAGCCTATATCTTGTCAAAATGTCAAAACA
ACTACTCATATAAAGCAGCAGTTGCACTGTCTTTTTCTCGGACAGTCAGCAGCAGATTGA
TTTTCCCTTGGATGCTCTGCCTTGGGCTGTTGACGGTTTGCACTGGAGGGTTTTGTGGAT
CGGGAGCTTAACTTATTTCATTCTTACTTCAATGCAGACTGTTGGACCTTCAGACGGAAG
TGGTTATGTTACAGATTATTATGGAACCAGACTTACAAGACTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HFTGREVGFFKPISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALG-LLKFCTVGFCG-IGSLIDFILISMQIVGPSDGSSYIIDYYGTRLTRL
H..G..V.F.KPISC.NV............LFLG...AD.F.LG..ALG.LL..CT.GFCG.IGSL..FIL.SMQ.VGPSDGS.Y..DYYGTRLTRL
Retrocopy
HLIGNKVHFLKPISCQNVKTTTHIKQQLHCLFLGQSAAD*FSLGCSALG/LLTVCTGGFCG/IGSLTYFILTSMQTVGPSDGSGYVTDYYGTRLTRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide