RetrogeneDB ID:
retro_ecab_559
Organism:
Horse ( Equus_caballus )
Location:
20:56388583-56388945 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.35 %
Coverage:
86.43 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Profilin [Source:UniProtKB/TrEMBL;Acc:F6UJ33]

Genomic region (view in browser)





>retro_ecab_559
GGGATCTGTCAGGACAAGACTATTCTGGGCTATAAGGACTCAACCTCTGGTCTGGGCCAT
CGTCCAGGCAAAACCTTCATCAACATCACGCCAGCTGAGGTTGGCGTCCTGGTTGGCAAA
GACTGGTCAAGTGTTCCCGTGAATGGGCTGACACTTGGGGGCTAGAAATATTATGTGATG
TGGGGCTCGCTGCCGCAGGGCGGGGAATTTACCCTCCATCTTCCTACCAGGAGCACGAGC
GGAGCCTCCACTTCACCATCATTGTCACCATGACTGCCAAGACGTTAGCCCTGCTGATGG
GCAATGCAAGTGTCCATGGTGGTATGATCGACAACAAGTGATATGAGATGGGCTCCTGCC
TG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GTCQDAAIVGYKDS-PSVWAAV-PGKTFVNITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPT-FNITVTMTAKTLV
G.CQD..I.GYKDS.P.VWA.V.PGKTF.NITPAEVGVLVGKD.SS..VNGLTLGG.K..V...SL.Q.GEFT..L.T.ST.GA.T.F.I.VTMTAKTL.
Retrocopy
GICQDKTILGYKDS\PLVWAIV/PGKTFINITPAEVGVLVGKDWSSVPVNGLTLGG*KYYVMWGSLPQGGEFTLHLPTRSTSGAST/FTIIVTMTAKTLA


Parental protein
LLMGKEGVHGGMINKKCYEMASHL
LLMG...VHGGMI..K.YEM.S.L
Retrocopy
LLMGNASVHGGMIDNK*YEMGSCL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide