RetrogeneDB ID:
retro_ecab_56
Organism:
Horse ( Equus_caballus )
Location:
22:38069087-38069663 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.73 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_56
ATGACTACAGCTTGGGTTCTGGTGCTCATGACCGTGGTGCTGGGCTTGGCCACAGCTGGC
CCTGTCCCCACTTCCAAGCCCACCACAACGTGGAGGGGCTGCCACATGGGCAGGTTCCAA
TCTCTGTCGCCACGGGAGCTGGAAGCCTTTAAGAAAGCCAAGGATGCCTTGGAAGAGTCG
CTCCTGCAGAACGACTGGAGCTGCAGCTCTCGCCTCTTCCCCATGACCAGAGACCTGAGG
CTGCTGCAGGTGCGGGAGCGCCCGGTGGCCCTGGAGGCTGAGCTACACCTGACGCTGAAG
GTCCTGAGGACTGCGGCTGATGCGTCCCTGGGCGTCGTCCTGGACCAGCCCCTTCACACG
CTGCGCCACATCCACTCCAGGCTCCGGGCCTGTGTCCCGGCTCAGCCCACAGCAGGCCCC
AGACCCCGGAGCCGCCTCCACCACTGGCTGCACCGGCTCCAGGAGGCCACGAAGAAGGAG
TCCCAAGGCTGCCTTGAGGCCTCCGTCACATTCAACCTCTTCCGCCTCCTCACACGGGAC
CTGAAATGTGTTGCCAGCGGAGACCTGTGCGTCTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAVRVLVLVIAGLGLARAGPVPTSKPATTQRSCDIGRFKSLSPSELEAFKKAKDALENSL--ENWTCRSPVFPTTWDLRQLQVWERPVALEAELALTLK
M....VLVL....LGLA.AGPVPTSKP.TT.R.C..GRF.SLSP.ELEAFKKAKDALE.SL....W.C.S..FP.T.DLR.LQV.ERPVALEAEL.LTLK
Retrocopy
MTTAWVLVLMTVVLGLATAGPVPTSKPTTTWRGCHMGRFQSLSPRELEAFKKAKDALEESLLQNDWSCSSRLFPMTRDLRLLQVRERPVALEAELHLTLK


Parental protein
ILAMVADSSLADILDRPLHTLRHIHSELQACVPARPTAGPGPRGRLHQWLRQLHEVQKK-SWGCLEASVTFNLFRLLTRDLNCVASGDLCL
.L...AD.SL...LD.PLHTLRHIHS.L.ACVPA.PTAGP.PR.RLH.WL..L.E..KK.S.GCLEASVTFNLFRLLTRDL.CVASGDLC.
Retrocopy
VLRTAADASLGVVLDQPLHTLRHIHSRLRACVPAQPTAGPRPRSRLHHWLHRLQEATKKESQGCLEASVTFNLFRLLTRDLKCVASGDLCV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide