RetrogeneDB ID:
retro_ecab_560
Organism:
Horse ( Equus_caballus )
Location:
21:230586-231731 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.0 %
Coverage:
54.38 %
Frameshifts:
5
Stop codons:
9


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_560
GACTTGGTGGCCATTTAGGATGTGGCTGTGAACTTCACCCTGAAGGAGTGGGCTTTACTG
GGTCCTTCATAGAAGAAACTCTACAGAGATGTGATGTGAGAAACCTTCAGGAACCAGGCC
TCAATAGGAAAAACATGGGAAGGTCATGATATTGAAGATCAGTACAAAAACCAGGGTAGA
AAACGAAGAAGTCATATGGTAAGGAGTCTGTGAAAGTGAAGAGAGTACTCAATGCAGAAA
ACATTTCAGCCTCATTCCAAATCTCAATCTGACAAGAAAACTACAGGAGCTAAACCATGT
GAATGATGTGCATGTGGGAAACTCTTTGTGCGTCATGCATCCCTTAACAGGCACCTTAGA
GTCACACTGAATCCACACCATATGACTATCAACAATATGGAGAGAAGCCATATACGTGTA
AGGAAGGTGGTTTCACTCTTACCAGTTTTCTTCAAATACATGAAAGAACTCATACTGGAG
AGAAACCCTATGAATGTAAAAAATGCAGTAATGCGTTCACTTCTTCCAGTTCTCTTTAAG
TCCATGAAAGGATTCATACTGGAGACAAACTCTATAAATGTAAAAACTGTGGGAAAGCCT
TTATAGCTCCCTCAAGCCTTTGATCACACATGATCTTTCACACTGGAGATGGACCTTATA
AAAGTAAGGAATGTGAGAAAGTGTTCATTTCTTCCAGTGCATTTCAAGTACATGAAAGGA
GTCACAGTGGAGAGAAACCCTACGAATGTAAAGATTGCAGTAACACATGCAGTCATTCCA
GTACACTTTGAATATACGAAAGACGTCACACTGGAGAGAAACCCTATGAATGTGAAGAAT
GTGAGAAAGCCTTAAGTTCTCATCAAAGTTTCCAAATACATAAAAGAAGTCATACAGGAG
AGAAACGATATGAATTTAAAAATGTAGCAAAGCTTTTAATTTTCCCAGTTCTCTTCAAAG
ACATGAAATAACTCACATGGGAGAGAAACCCTGTGAATGTCAGTAAAGTGGGAAGGCCTT
TATTTTTCATGCAAACTTTCAAGGATATACAAGAAAGCATACTAGAGGAAAAACCAATTA
AATATAATGGATGCGGGAAAGGCTTTCATCATCACAGTTCTTTCTGAAGGCATAAAAGGA
GTCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DSVAIEDVTVSFTLEEWALLDPSQKKLYRDVMWETFRNLASVGKTWEDHDIEEKYQKQERKLRSHMVER-LCESEEGGQCGENFSLLPNLKLK-KKPTAA
D.VAI.DV.V.FTL.EWALL.PS.KKLYRDVM.ETFRN.AS.GKTWE.HDIE..Y.K.....R.....R..CESEE..QC...FSL.PNL.L..KK.T.A
Retrocopy
DLVAI*DVAVNFTLKEWALLGPS*KKLYRDVM*ETFRNQASIGKTWEGHDIEDQY-KNQGRKRRSHMVR\VCESEESTQCRKHFSLIPNLNLT/KKTTGA


Parental protein
KPYKCSACGKVFMHHSSLNRHVRC-HNEHRPHAYQKCAEKPYKCKECGKAFPFPSSLQIHERTHTGEKPYECKNCGKAFISSKSLRIHERIHTGEKPYEC
KP....ACGK.F..H.SLNRH.R..H.E..P..YQ...EKPY.CKE.G..F...S.LQIHERTHTGEKPYECK.C..AF.SS.SL..HERIHTG.K.Y.C
Retrocopy
KPCE*CACGKLFVRHASLNRHLRV/HTESTPYDYQQYGEKPYTCKEGG--FTLTSFLQIHERTHTGEKPYECKKCSNAFTSSSSL*VHERIHTGDKLYKC


Parental protein
KECGKAFTAPSSLRSHMISHTGDGPYKCKECRKVFISPSAFRIHERSHTGEKPYECKNCGKAFTSSKSLRIHERIHTGEKPYECKECGKAFTAPSSLRLH
K.CGKAF.APSSL.SHMI.HTGDGPYK.KEC.KVFIS.SAF..HERSH.GEKPYECK.C......S..L.I.ER.HTGEKPYEC.EC.KA.....S...H
Retrocopy
KNCGKAFIAPSSL*SHMIFHTGDGPYKSKECEKVFISSSAFQVHERSHSGEKPYECKDCSNTCSHSSTL*IYERRHTGEKPYECEECEKALSSHQSFQIH


Parental protein
MISHTGDGPYKCK-ECKKVFISPSAFQIHERSHTGEKPYECKYCGKAFISSSSFQIHERSHT-GEKPYECKECGKAFSLYANLKKHQKTH
..SHTG...Y..K..C.K.F..PS..Q.HE..H.GEKP.EC...GKAFI....FQ...R.HT..EKP.....CGK.F........H...H
Retrocopy
KRSHTGEKRYEFK/KCSKAFNFPSSLQRHEITHMGEKPCECQ*SGKAFIFHANFQGYTRKHT\EEKPIKYNGCGKGFHHHSSF*RHKRSH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide