RetrogeneDB ID:
retro_ecab_562
Organism:
Horse ( Equus_caballus )
Location:
21:8311897-8312182 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.86 %
Coverage:
51.87 %
Frameshifts:
0
Stop codons:
4


Parental gene:
Parental gene symbol:
RPE
Parental gene aliases:
No gene alias available
Parental gene description:
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]

Genomic region (view in browser)





>retro_ecab_562
TTTATTCCCTGCATCACCATTGGTCACCCTCAAATCCTTCAAAAGCAACTAGACAAGAAC
TCTTTCTTTCACATCCACATGATCTTCTCCAGGACAGAATAGCAGGTAAAGACAATAGCT
ATAGCAGGAACAAATTAATATGCTTTTCATCTTGAAGCTACTGAGAGACCAGGAGCATTT
ATTAAAGACATATAGGAGAATTGGATGAAGTTTGGTCTCACCATTAAACCAGGAACTACA
ATAGAATATTTGGGACCATAAACTAATCTAATAGACATGACCTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMAL
F.P.IT.GHP....L.KQL....FF..HM..SR.E..VK..A.AG.N.Y.FHLEATE.PGA.IKDI.EN.MK.GL.IKPGTT.EYL.P..N.IDM.L
Retrocopy
FIPCITIGHPQI--LQKQLDKNSFFHIHMIFSRTE*QVKTIAIAGTN*YAFHLEATERPGAFIKDI*ENWMKFGLTIKPGTTIEYLGP*TNLIDMTL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide