RetrogeneDB ID:
retro_ecab_563
Organism:
Horse ( Equus_caballus )
Location:
21:10036356-10037698 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.48 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
TMCC3
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane and coiled-coil domain family 3 [Source:HGNC Symbol;Acc:29199]

Genomic region (view in browser)





>retro_ecab_563
GTAGAGCGTCATGACATGAATACCCTAAGCCTGCCCCTCAACATACGCCGAGGGGGCTCA
GACACCAACCTCAACTTCGACGTACCAGATGGCATCCTGGACTTCCACAAGGTCAAACTC
AGCGCGGACAGCCTGAAGCAGAAAATCCTAAAGGTAACAGAGCAGATAAAAATAGAGCAG
ACGTCCCGTGATGGGAACGTGGCGGAGTATCTGAAGCTGGTCAGCAGCGCGGACAAGCAG
CAGGCCGGCCGGATCAAGCAAGTCTTTGAGAAGAAGAATCAGAAGTCAGCTCACTCGATC
GCCCAGCTGCAGAAGAAGTTAGAAAAGTATCATAGAAAGCTCAAGGAGATCGAACAGAAC
GGAGCCTCCAAAAGCTCAAAGGACTTTTCCAAAGACCACCTGGAGGACATCCAGCACTCT
CTGAAAGATGCCCACGCCAAGTCTCGAACGGCGCCCGGCAACATGGAGAGCGGTAAATCG
GGCATGCCAGGGGTGTCCCTCACTCCCCCCGTGTTCGTCTTTAATAAGTCCAGGGAGTTT
GCCAACCTGATCCGTAATAAGTTTGGCAGCGCCGACAACATCGCTCACTTAAAAAATTCC
TTAGAGGAGTTTAGGCCCAAGGCGAGTGCCAGGGTCTACGGGGACAGCGCGACCATTGTG
AACAAGCCCAAGTATGGCAGTGACGACGAGTGTTCAAGTGGCACCTCGGGTTCCACCGAC
AGTAATGGGAACCAGTCGTCCGGGCTGGTGGAGCCAGCACGCTGGACAGCCAGGGGAAGC
TCACCATGATCCTGGAGGAGCTGTGGGAGATCAAGGACACCCAGGCACAGCTGGCTGAGG
ACATCGAGGTGCTGAAGGTGCAGTTTAAGAGAGAATATGGTTTTATTTCTCAGACCCTGC
AAGAAGAGAGATACAGGTACAAGTGACTGGAAGACCAGCTCCATGACATGACGGACCTGC
ATCAGCACGAGACAGCCAACCTGAAACAGGAGCTGGCCAGCATCGAGGACAAGGTGGCCT
ACCAGGCCTAGGAGCGCTCGCGGGACATCCAGGGAGCCTTGGAGTCCTGCCAGACTCGCA
TCTCGAAGCTGGAGCTGCACCAGCAGGAGCAGCAGACGGACACCGTGAATGCCAAAGTTC
TCCTGGCAAGTGCATCAACATGGTCCTGGCCTTCATGACTGTGATCTTGGTGTGTGTGTC
TACCATCACCAAGTTCGTCTCGCCCATGATGAAGAGCCGCTTCCACATTGTCGGCACCTT
CTTTGCTGTGACTCTTCTTGCAATATTTTGTAAAAACTGGGACCATATTCTGTGTGCCAT
AGAAAGGATAATAATACCAAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VERHDMNTLSLPLNIRRGGSDTNLNFDVPDGILDFHKVKLSADSLKQKILKVTEQIKIEQTSRDGNVAEYLKLVSSADKQQASRIKQVFEKKNQKSAHSI
VERHDMNTLSLPLNIRRGGSDTNLNFDVPDGILDFHKVKLSADSLKQKILKVTEQIKIEQTSRDGNVAEYLKLVSSADKQQA.RIKQVFEKKNQKSAHSI
Retrocopy
VERHDMNTLSLPLNIRRGGSDTNLNFDVPDGILDFHKVKLSADSLKQKILKVTEQIKIEQTSRDGNVAEYLKLVSSADKQQAGRIKQVFEKKNQKSAHSI


Parental protein
AQLQKKLEQYHRKLKEIEQNGASKSSKDFSKDHLKDIQHSLKDAQAKSRTAPGNMESSKSGMPGVSLTPPVFVFSKSREFANLIRNKFGSADNIAHLKNS
AQLQKKLE.YHRKLKEIEQNGASKSSKDFSKDHL.DIQHSLKDA.AKSRTAPGNMES.KSGMPGVSLTPPVFVF.KSREFANLIRNKFGSADNIAHLKNS
Retrocopy
AQLQKKLEKYHRKLKEIEQNGASKSSKDFSKDHLEDIQHSLKDAHAKSRTAPGNMESGKSGMPGVSLTPPVFVFNKSREFANLIRNKFGSADNIAHLKNS


Parental protein
LEEFRPEASARVYGGSATIVNKPKYGSDDECSSGTSGSADSNGNQSFG-AGGAGTLDSQGKLTMILEELREIKDTQAQLAEDIEALKVQFKREYGFISQT
LEEFRP.ASARVYG.SATIVNKPKYGSDDECSSGTSGS.DSNGNQS.G.AGGA.TLDSQGKLTMILEEL.EIKDTQAQLAEDIE.LKVQFKREYGFISQT
Retrocopy
LEEFRPKASARVYGDSATIVNKPKYGSDDECSSGTSGSTDSNGNQSSG/AGGASTLDSQGKLTMILEELWEIKDTQAQLAEDIEVLKVQFKREYGFISQT


Parental protein
LQEERYRYERLEDQLHDMTDLHQHETANLKQELASIEEKVAYQAYERSRDIQEALESCQTRISKLELHQQEQQVLQTDTVNAKVLL-GKCINVVLAFMTV
LQEERYRY..LEDQLHDMTDLHQHETANLKQELASIE.KVAYQA.ERSRDIQ.ALESCQTRISKLELHQQEQQ...TDTVNAKVLL.GKCIN.VLAFMTV
Retrocopy
LQEERYRYK*LEDQLHDMTDLHQHETANLKQELASIEDKVAYQA*ERSRDIQGALESCQTRISKLELHQQEQQ---TDTVNAKVLL/GKCINMVLAFMTV


Parental protein
ILVCVSTIAKFVSPMMKSRFHIVGTFFAVTLLAIFCKNWDHILCAIERIIIPR
ILVCVSTI.KFVSPMMKSRFHIVGTFFAVTLLAIFCKNWDHILCAIERIIIPR
Retrocopy
ILVCVSTITKFVSPMMKSRFHIVGTFFAVTLLAIFCKNWDHILCAIERIIIPR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide