RetrogeneDB ID:
retro_ecab_564
Organism:
Horse ( Equus_caballus )
Location:
21:11374042-11374535 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.94 %
Coverage:
83.42 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_564
AGAAAAAGCAACATAAGGAAAATGGGTATCCGAGAAGGAGAAGAGAGGGAAAAAAGACCA
GAGAGTTTATTTAAAGAAATAATAGCTGAGAATTTCCTAAACCTGGAGAAGAAACTGGAT
ATAAAAGTACATGAGCTAATGGCACTCCCAATTATCTCAATGCAAAAAGACCTTCTCCAG
GGCACATTATATTAAAACTGTCAAAAGCCAATGAGAAAGAAAGAAAATTAACAGTGGCCA
GAGAGAGGAAACTAACATAAAAGGAACCCCCATAAGGCTATCAGTGGATTTCTCAGCAGA
AACTACAGGCTACGAGAGAGTGGAATGATATATTCAAAATATTGGAAGATAAAAACTGTC
AGCTAAGAATACTCTATTCAGTAATGCTATCCTTCAGAAATGAAGGAGAAATAAAGGCTT
TCCCAGACAAACAAAAGCTGAAGGAGTTCATCACATTAGACCAGCCTTACAAGAAATGTT
GAAAGGAGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKE-ANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKIT-YKGSPIRLSAD
RK.NIR...I..GEER..R.ESLFKEII.ENFLNL.K.L.I.V.E.AN.TPNY.N..RPSP.HI..KL.K...KE......AR..K.T..KG.PIRLS.D
Retrocopy
RKSNIRKMGIREGEEREKRPESLFKEIIAENFLNLEKKLDIKVHE/ANGTPNYLNAKRPSPGHIILKLSKANEKERKLT-VARERKLT/IKGTPIRLSVD


Parental protein
FS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFIT-TRPPLQEMMKTAL
FS.Q..Q..REWNDI.KIL..KN...RILY.V.LSFR...EIKAF.DKQKL.EFIT..RP.LQEM.K.AL
Retrocopy
FS\QKLQATREWNDIFKILEDKNCQLRILYSVMLSFRNEGEIKAFPDKQKLKEFIT/IRPALQEMLKGAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide