RetrogeneDB ID:
retro_ecab_565
Organism:
Horse ( Equus_caballus )
Location:
21:26072618-26073039 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.89 %
Coverage:
74.47 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
FKBP3
Parental gene aliases:
No gene alias available
Parental gene description:
FK506 binding protein 3, 25kDa [Source:HGNC Symbol;Acc:3719]

Genomic region (view in browser)





>retro_ecab_565
CAGAACATGTTATTAAGAAACTTTAAAAATGTGGCTAAAACAGCTAACAAGGACCATTTG
GTTACAGCCTATAACCATCTCTATGAAAGCAAGCGTTTCAAGGGTACTGAAAGTCTAAGT
AACGTGTGCAAGGAGGTGAAAAATTGGAAGCTTACTGAAGATAAACCGGAAGAAATCAAG
TTTGAAGAGTCTCTGAATGGGGGTCCACCGAAATATACAAAATCTGTCCTTAAAAAAGGA
GATGAAACCAACTTTCCCAAAAAGGGAGATGTTGTTCACTGCTGATATACAAGAGTAAGA
CACGATGGCACTGTTTCTGATACTAATATTCAAACAAGTTCAAAGAAGAAGAAAAGCACC
AAGCCTTGTAAATTTTAAGGTTGGAATAGGCAAAATTATCAGAGGATTGGATGAAGTCTT
A

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EHKLLGNIKNVAKTANKDHLVTAYNHLFESKRFKGTESVSKVSEQVKNVKLNEDKPKETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTL
...LL.N.KNVAKTANKDHLVTAYNHL.ESKRFKGTES.S.V...VKN.KL.EDKP.E.K.EE.L..GPPKYTKSVLKKGD.TNFPKKGDVVHC.YT...
Retrocopy
QNMLLRNFKNVAKTANKDHLVTAYNHLYESKRFKGTESLSNVCKEVKNWKLTEDKPEEIKFEESLNGGPPKYTKSVLKKGDETNFPKKGDVVHC*YTRVR


Parental protein
QDGTVFDTNIQTSSKKKKNAKP-LSFKVGIGKVIRGWDEAL
.DGTV.DTNIQTSSKKKK..KP...FKVGIGK.IRG.DE.L
Retrocopy
HDGTVSDTNIQTSSKKKKSTKP\VNFKVGIGKIIRGLDEVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide