RetrogeneDB ID:
retro_ecab_569
Organism:
Horse ( Equus_caballus )
Location:
21:40696040-40696521 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.54 %
Coverage:
62.79 %
Frameshifts:
2
Stop codons:
5


Parental gene:
Parental gene symbol:
UBXN2A
Parental gene aliases:
No gene alias available
Parental gene description:
UBX domain protein 2A [Source:HGNC Symbol;Acc:27265]

Genomic region (view in browser)





>retro_ecab_569
GAATATTTTGTTAACAGCCATTGAAAGAAGCTCAGAAGATTGGTGCTAACTGCTTGTCAT
CCACGGAAAAGAACAGGTAAATGTCAGTATAAAAGATTATGGAAAAATGAATTCTAAGAG
TCTAATGATTTCAGAAGTTATTCTGATGACTCAAGTCAGCGGTTTCTGAACTCCATCAAA
AAGAGGAATTACCTTTAGAGTTACATGGGATTTTTGATTAAGAAGAGGTGGATATTAAGG
CTGAAGATGAGGAACATGAAGTAGGTATGTCAATGAAGCCTATATTGCAGCCCTTCTCAG
GACAGGATCACAGACTGAAAAGCACCACACCAAAAATTTTTCTAAAGCAAAGAGTATTGA
GGATGAGAATAAAGATACTCTGTCTGTTGTCCCACTAAATAGTCTGGAACACTTCACTAA
AATACAAATCTTGTTAGCCAATTAGAAAAAGATCATCTAGAAATTTCATATTTCCCACAG
G

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EYFVDSLFEEAQKVGAKCLSPAEQKKQVDVSIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKG-ELPLELQGIFDKEEVDVKVEDKKNEVCMSTKPVFQP
EYFV.S..............P............LWKN.F....DFRSYSD..SQ.FLNSIKK..ELPLEL.GIFD.EEVD.K.ED...EV.MS.KP..QP
Retrocopy
EYFVNSH*KKLRRLVLTACHPRKRTGKCQYK-RLWKNEF*ESNDFRSYSDDSSQRFLNSIKKR/ELPLELHGIFD*EEVDIKAEDEEHEVGMSMKPILQP


Parental protein
FSGQGHRLGSATPKI-VSKAKSFEVENKNSLSTVPLNHLEPITNIQIWLANGKRIVQKFNISHR
FSGQ.HRL.S.TPKI..SKAKS.E.ENK..LS.VPLN.LE..T.IQI.LAN.K.I..KF.ISHR
Retrocopy
FSGQDHRLKSTTPKI/FSKAKSIEDENKDTLSVVPLNSLEHFTKIQILLAN*KKII*KFHISHR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide