RetrogeneDB ID:
retro_ecab_57
Organism:
Horse ( Equus_caballus )
Location:
6:25683122-25683773 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.91 %
Coverage:
72.15 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_57
ATGGAGCCTTCTCACCAAGCGTGCCCACACCGGAATTTTCAGGAAGAAGTAGAGTTTCTT
AATGCAATTTTCCCAAATGGAGCAGCATATTGTATGGGACGTATGAATTCTGCCTGTCGG
TACTTGTATACTTTGGATTTCCCAGAGAGTCGGGTGATCAGTCAGCCAGCTCGAACCCTG
AAAATCCTGATGAGCGAGCTTGACCCAGCAGCTCTGGACCAGTTCTACGTGAAAGATGGC
GTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTTGTGACGGGATACCAGGTTCTGTC
ATTGATGCCACAATGTCCAATCCTTGTGGGTATTCAATGAATGGAATGAAATCAGATGAA
ACTTATTGGACTATTTGCATCACTACAGAACCAGAATTTTCTTATGTTAGCTTTGAAACA
AACTTAAGTCAGACTTCCTACGATGACCTGATCAGGAAAGCTGTAGAAGTCTTCAAGCCA
GGAAAATTTGTGACCACCCTGTTTGTAAATCAGAGTTCTAAATGTCCCATGGTGCTTTCT
TCACCCCAGAAGATTGAAGGTTTTAAACGTCTTGATTGCCAGAGTGCTATATTCAATAAT
TACTATTTTGTTTTTACCACTTTTGCTAAGCAGCAACAACAGCAGAGTTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.1
SRP021940_embryo 0.26
SRP021940_placental_villous 0.94
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSV
M.PSHQ..PHRNFQEE.EFLNAIFPNGAAYCMGRMNS.C.YLYTLDFPESRVISQP..TL.ILMSELDPA..DQFY.KDGVTAKDVTRESGI.D.IPGSV
Retrocopy
MEPSHQACPHRNFQEEVEFLNAIFPNGAAYCMGRMNSACRYLYTLDFPESRVISQPARTLKILMSELDPAALDQFYVKDGVTAKDVTRESGICDGIPGSV


Parental protein
IDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLSSPQKIEGFKRLDCQSAMFND
IDATM.NPCGYSMNGMKSD.TYWTI.IT.EPEFSYVSFETNLSQTSYDDLIRK.VEVFKPGKFVTTLFVNQSSKC..VLSSPQKIEGFKRLDCQSA.FN.
Retrocopy
IDATMSNPCGYSMNGMKSDETYWTICITTEPEFSYVSFETNLSQTSYDDLIRKAVEVFKPGKFVTTLFVNQSSKCPMVLSSPQKIEGFKRLDCQSAIFNN


Parental protein
YNFVFTSFAKKQQQQ
Y.FVFT.FAK.QQQQ
Retrocopy
YYFVFTTFAKQQQQQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide