RetrogeneDB ID:
retro_ecab_570
Organism:
Horse ( Equus_caballus )
Location:
21:52373786-52374085 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
84.31 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SUMO1
Parental gene aliases:
No gene alias available
Parental gene description:
small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]

Genomic region (view in browser)





>retro_ecab_570
ATGTCTGACCAGGAGGCAAAACCTTCAGCTAACGATTTGGGGGATAAGAAGGAAGGAGAA
TCCATGAAACTAAAAGTCACTGGACAGGAGAGCGGTGAGATTCACTTCAAAGTGACAATG
ACGACACATCTCAAGAAACTCAAAGAATCCTACTGTCAAAGACAGGGAGTTCCAATGAAT
TCCCTCAGGTTTCTCTTTGAAGGCTGGAGAATTGTTGATAATCACACTCCAAAAGAACTG
GGGATGGAAGAAGAAGTGATTGAAGTTGATTAGAACAAACAGCGGGTCATTCAACCGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.07
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVY-QEQTGGHS
MSDQEAKPS..DLGDKKEGE..KLKV.GQ.S.EIHFKV.MTTHLKKLKESYCQRQGVPMNSLRFLFEG.RI.DNHTPKELGMEEE.VIEV...EQT.GHS
Retrocopy
MSDQEAKPSANDLGDKKEGESMKLKVTGQESGEIHFKVTMTTHLKKLKESYCQRQGVPMNSLRFLFEGWRIVDNHTPKELGMEEE-VIEVD/LEQTAGHS


Parental protein
TI
T.
Retrocopy
TV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide