RetrogeneDB ID:
retro_ecab_571
Organism:
Horse ( Equus_caballus )
Location:
21:216617-217160 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.13 %
Coverage:
91.46 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_571
AGACTTAAGAAAATGAAGACATTCATTGAGAAATATCCAACTCACTTAGTAAAAGTAACA
TAAAGATTATAGGTATCCCAGAGGGAGAAGTGAGGGAGAAAGGAGCAGAGAGCTTGTTCA
AAGAACTAATAGCTGATAACTTCCAAAACCTGGAGAAAGAACTGGACTTACAAGTACATG
AAGTCAACATAACTGCTAATTACATCAATACAAAAAGACCTTCTTCAAGGCATATAGTAT
TAAAACTGGCAAAAGTCAATGACAAAGAAAATGTATTAAGGGAAGCAAGAGAGAAGAAGA
TAACCTACCAAGGAACCTCCATCAGGCTTTCAGTGGATATCTGCAGAAACCTTACAGCTG
AGTAGAGAGTGGAATGATATATTCAAAATACTGAAATACAAAAGCTATTAGCCAAGAATA
CTCTATTCAGCAAAATTGTTGTTCAGATACAATGGAGAAATAAAAGCTTTCCAAGATAAA
CAAAAGCTGAGAGAGTTCATCACCACCGGACCTGCCTTGCAAGAAATGATGAAGGGAGCC
CTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLKR-SEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQ
RLK...EDI..EI.N...K.NI.II.IP.GE.R....ESLFKE.I..NF.NL.K.L..QV.E.N.T.NYIN..RPS.RHI..KLAK...KE....EA.R.
Retrocopy
RLKK/NEDIH*EISNSLSKSNIKIIGIPEGEVREKGAESLFKELIADNFQNLEKELDLQVHEVNITANYINTKRPSSRHIVLKLAKVNDKENVLREA-RE


Parental protein
KKITYKGSPIRLSADF-SQTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
KKITY.G..IRLS.D....T.Q..REWNDI.KILKYK.Y.PRILY..KL.FRY..EIKAFQDKQKLREFITT.P.LQEMMK.AL
Retrocopy
KKITYQGTSIRLSVDI\AETLQLSREWNDIFKILKYKSY*PRILYSAKLLFRYNGEIKAFQDKQKLREFITTGPALQEMMKGAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide