RetrogeneDB ID:
retro_ecab_574
Organism:
Horse ( Equus_caballus )
Location:
21:19260581-19261244 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.88 %
Coverage:
99.11 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_574
GAGATGAAAAACACAATAGATGAGATAAAGAAAAATCTGGACTCCCTAAACAACAAAACG
GAGCATTTGGAAGACCAAATTAACAGTTTAGAAGACAATACTATAGAAATGCTTCAGAGG
GAGGAGAAGAGAGAGCTAAGACTAAAAAGAAATGAAGAAGCTCTCAGAGAAATATCTGAC
TCAATTAGAAAATGCAACATAAGGATTATAGGCATTCCAGAGGGGGAAGAGAAGGAGAAC
GAAGCAGAAAGCTTGTAATAGTGGAGATCTTCCCAAACCTGGGGAAAGAGATGGAAATCC
ATGTGAAAGAGGCTACCAGAACTCCCAACTATGTTAATGTAAAAAGACTACTACAAGGCA
TATTGTAATAAAGCTGGCAAAAGTCAATGACAAAGAAAAAATACTAAGGGCGGTAAGGCA
GAAGAAAAGAACTTACAAAAGAACCCCTATCAGGCTTTCAGCAGATTTCTCAGCAGAAAC
CTTACAGGCTAGGAGAGAGTGGAATGATATATTTAAAATCCAGAAAGACAAAAAATTTCA
GCCAAGAATACTCCATCCAGTGAAAATCTCCTTCAGATATGATGGAGAAATAAAAACTTT
CCAAGATAAACAAAAGCTCAGGGAGTTCATTGTCACAAGACTCCCCTACAAGAAATCCTC
AAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVKSAITEKKSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEKRIRQNENSLRELWDNIKCANIHVIGVPEERQR-GRKLFEEIIAEIFPNLRKETD
E.K..I.E.K..L...N......E..IN.L.D...E....E.K.E.R...NE..LRE..D.I...NI..IG.PE.....G.......I.EIFPNL.KE..
Retrocopy
EMKNTIDEIKKNLDSLNNKTEHLEDQINSLEDNTIEMLQREEKRELRLKRNEEALREISDSIRKCNIRIIGIPEGEEK/GERSRKLVIVEIFPNLGKEME


Parental protein
TQVQEAQRVPNKTSPKR-PTSRHIIIKMSKIKDKERILKAARERQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKV-KEKNLQPRILYPARLSFTMEGE
..V.EA.R.PN....KR..T.RHI.IK..K..DKE.IL.A.R.....TYK..PIRLS.DFSA.TLQ.RREW.DIFK..K.K..QPRIL.P...SF...GE
Retrocopy
IHVKEATRTPNYVNVKR/TTTRHIVIKLAKVNDKEKILRAVRQKKR-TYKRTPIRLSADFSAETLQARREWNDIFKIQKDKKFQPRILHPVKISFRYDGE


Parental protein
IKSFQDKQKLKEFIT-KKPILQEMLK
IK.FQDKQKL.EFI...K..LQE.LK
Retrocopy
IKTFQDKQKLREFIV/HKTPLQEILK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide