RetrogeneDB ID:
retro_ecab_576
Organism:
Horse ( Equus_caballus )
Location:
21:27407468-27407855 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.09 %
Coverage:
55.51 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
PRDX4
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 4 [Source:HGNC Symbol;Acc:17169]

Genomic region (view in browser)





>retro_ecab_576
CTTGATTTCACATTTTGGGGTCCAACAAAAACCATCAATTTAGGGACAGAATTGAGACTT
TCGATTGATAAACACTGAAGTGAGAGCATGCCCTGTGGATTCACAGTTTGCCTATTTAGC
ATGGAGTGGTGCCCCTCACACACAAAGGAGACTTAAGCCTCTGGAGATTTCACTTCTTTC
AGATTTGACTCGTTAGATTTCAAAGAATTCTAGTGCTGGAGAGAACCTGGGACACAAACT
TAGAGGTCGCTTTACTACTGATGAAAAAGGAAATCCAAAGGCAGTTTGCGATGGACAACC
CTCCTGTTGGCAGAGTACTGATGAGGTACTACGCCTGGTCCAAGTATTCCAGCACACTGA
CAACACGGGAATGTCTGTCCCGGTGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LDFTFVCPTEIIAFG-DRIE-EFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKG-ILRQI
LDFTF..PT..I..G.DRIE..FR.INTEV.AC.VDSQF..LAW...P..Q..L.P..I.LLSDLT..ISK......E..GH.LRG.F..D.KG.I.RQ.
Retrocopy
LDFTFWGPTKTINLG/DRIE/DFRLINTEVRACPVDSQFAYLAWSGAPHTQRRLKPLEISLLSDLTR*ISKNSSAG-ENLGHKLRGRFTTDEKG\IQRQF


Parental protein
TLNDLPVGR-SVDETLRLVQAFQYTD-KHGEVCPAG
.....PVGR.S.DE.LRLVQ.FQ.TD..HG.VCP.G
Retrocopy
AMDNPPVGR/STDEVLRLVQVFQHTD/QHGNVCPGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide