RetrogeneDB ID:
retro_ecab_577
Organism:
Horse ( Equus_caballus )
Location:
21:28580984-28581610 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.81 %
Coverage:
77.99 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
APOOL
Parental gene aliases:
No gene alias available
Parental gene description:
apolipoprotein O-like [Source:HGNC Symbol;Acc:24009]

Genomic region (view in browser)





>retro_ecab_577
CATTTACAAATGAGCTTTGCATCCATCCGTGCTACAACTGGTCATTATATTGGCTGATGC
AAGGGTGTGTACGACTTTGTAAAAAATGGGATGATGGATACAGAACAATTTGGAAAAGAT
GCGTATGTCTACCTGAAAAATCCACCTCGAGATTTTCTTCTGAAAATTGGAGTCATTACA
GTCTCAGGGTTGGCAGGCTTGGTTTCAGCAAGAAAAGGTTCTAGGTTTAAGAAAATTGCT
TATCCAATGGGGCTGGCCACTTTAGGAGCATCTGCTTGCTACTCAGTTCAGTCGGTAATA
ATTGCGAAGGTAACTAGAAGAAAGGCATATGCTACAAGCAGCCAATTTACGAGGCAGTTA
AATCATTGCAGACAAAGAACAACAAAAAAGAGCCACTTCCTGAACCTAAAGAAACAACTA
AGCTAGGAAGGTCTGTTGGGATAGAAATACCTGCAAAAATGACTCACAACCTGAAACACT
CAGTGCCTTTGCCAACAGAACTCAGCCCTGAAACAAAGACCGAATCAGAATCCACCTCAG
GTGCTACACACTTTATGCCTGACCCCAAGCTCATGGATCACAGGCAGTCCCACCCAGAAG
ATGTAGATGTGTACAGCACTAGAAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NLQMSFASIRATTGRYIGWCKGVYDFVKNGIMDTVQFGKDAYIYLKNPPRDFLPKVGVITVSGLAGLVSARKGSRFKKIAYPLGLATLGASVCYPVQSVI
.LQMSFASIRATTG.YIG.CKGVYDFVKNG.MDT.QFGKDAY.YLKNPPRDFL.K.GVITVSGLAGLVSARKGSRFKKIAYP.GLATLGAS.CY.VQSVI
Retrocopy
HLQMSFASIRATTGHYIG*CKGVYDFVKNGMMDTEQFGKDAYVYLKNPPRDFLLKIGVITVSGLAGLVSARKGSRFKKIAYPMGLATLGASACYSVQSVI


Parental protein
IAKVTGRKAYATSQQ-IYEAVKSLWTKNNKKESLPEPKEKTKLGSPAEIEIPAKTPHDLKHSVPLPTEFSSETKTKLESPSGATQFLPDPKLMDHGQSHP
IAKVT.RKAYATS.Q.IYEAVKSL.TKNNKKE.LPEPKE.TKLG....IEIPAK..H.LKHSVPLPTE.S.ETKT..ES.SGAT.F.PDPKLMDH.QSHP
Retrocopy
IAKVTRRKAYATSSQ/IYEAVKSLQTKNNKKEPLPEPKETTKLGRSVGIEIPAKMTHNLKHSVPLPTELSPETKTESESTSGATHFMPDPKLMDHRQSHP


Parental protein
EDADMYSTRS
ED.D.YSTRS
Retrocopy
EDVDVYSTRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide