RetrogeneDB ID:
retro_ecab_578
Organism:
Horse ( Equus_caballus )
Location:
21:34006866-34007168 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.82 %
Coverage:
90.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Cytochrome c oxidase subunit 6A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6RVC7]

Genomic region (view in browser)





>retro_ecab_578
GGGCTTCTAGATGGGTCCCTGTCACAACTGGGGCTGCCTGTATCCAGGTGTGCCCCAAAC
GAGGAGGGCTCAGCTTGCACATGGAAGCACATGGAAGTCCTCATATTCTGCATGCTCCTC
GGGGTGGAAGTCAGCATGCTGACCGCCTTCCTGAAATCACAACAGGGAGAGTGTAAGAAC
CTAAGTTCTTTGCCTACCCCTATCTCTTCCTCAGGTCCAAGTGCTTTCCCTGGGGAGATG
GTAACCATACTCTATTCCATAACCCTCACGCAAAGCCACTTCTGCCCTGCAATGAAGATG
AA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GLLGRSRAQLGRPMSSGAHGEEGSARMWKALTY--FVALPGVGVSMLNVFLKSHQGEHER-PEFVAYPHLRIRSKPFPWGDGNHTLFHNSHVNPLPTGYE
GLL..S..QLG.P.S..A..EEGSA..WK......F..L.GV.VSML..FLKS.QGE....P.F.AYP.L..RSK.FPWGDGNHTLFHN.H..PL....E
Retrocopy
GLLDGSLSQLGLPVSRCAPNEEGSACTWKHMEVLIFCMLLGVEVSMLTAFLKSQQGECKN/PKFFAYPYLFLRSKCFPWGDGNHTLFHNPHAKPLLPCNE


Parental protein
DE
DE
Retrocopy
DE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide