RetrogeneDB ID:
retro_ecab_579
Organism:
Horse ( Equus_caballus )
Location:
21:35070581-35070857 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.63 %
Coverage:
73.81 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
CDK2AP2
Parental gene aliases:
No gene alias available
Parental gene description:
cyclin-dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:30833]

Genomic region (view in browser)





>retro_ecab_579
ATGTCCTACAAATCCATTGCCCCCAACCTCAGCAGCAGCCCCAGTCCAGCACCCCTGGGC
CCAGCACCCTGCTCTCCATAGCCTTTAGTGTCCCATCGCCATCAGTGGGACTCGGTGCCC
GGAGGCACTGCGTGTTTTGGACCAGTATTTAAGGACTTTGGTCCACCCTCCTTGGGCTAT
GTGCAGGTGACGAAGACACCCAGCATCCAGGACTCCCAGGGCACCTACAGGGACCTGCTA
TGGGAGACAGGCAAAGAGCTCTGGCCCGCCTATGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSYKPIAPAPSSTPGSST--PGPGTPVPTGSVPSPSGSVPGAAAPFRPLFNDFGPPSMGYVQAMKPPGAQGSQSTYTDLLSVIEEMGKEIRPTYA
MSYK.IAP..SS.P......P.P..P.P..S......SVPG..A.F.P.F.DFGPPS.GYVQ..K.P..Q.SQ.TY.DLL....E.GKE..P.YA
Retrocopy
MSYKSIAPNLSSSPSPAPLGPAPCSP*PLVSHRHQWDSVPGGTACFGPVFKDFGPPSLGYVQVTKTPSIQDSQGTYRDLL---WETGKELWPAYA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide