RetrogeneDB ID:
retro_ecab_580
Organism:
Horse ( Equus_caballus )
Location:
21:35689483-35689703 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.67 %
Coverage:
96.1 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
HSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203]

Genomic region (view in browser)





>retro_ecab_580
GCCAAGACAGGCCCTGAAGACTGTGCAGGATCTCCCCTCTGTCATGCAGACTCTCCTGCA
ACAGATGCAAGATAAATTTCAGTCCATGTCTGATCAGGCCATTGGAAGACCTGATGACAT
GAGTAGTTGCACTGATGACCTGGAGAGAAACATTGCAGACCTCGTGACATAGGCTGGGGT
GGAAGAATTGGAAGGTGAAAACAAGATACCTGCCACAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AETDP-KTVQDLTSVVQTLLQQMQDKFQTMSDQIIGRTLDDMSSRIDDLEKNIADLMTQAGVEELEGENKILATQ
A.T.P.KTVQDL.SV.QTLLQQMQDKFQ.MSDQ.IGR..DDMSS..DDLE.NIADL.T.AGVEELEGENKI.AT.
Retrocopy
AKTGP\KTVQDLPSVMQTLLQQMQDKFQSMSDQAIGRP-DDMSSCTDDLERNIADLVT*AGVEELEGENKIPATK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide