RetrogeneDB ID:
retro_ecab_581
Organism:
Horse ( Equus_caballus )
Location:
21:35786547-35787395 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.71 %
Coverage:
52.81 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
EHD3
Parental gene aliases:
No gene alias available
Parental gene description:
EH-domain containing 3 [Source:HGNC Symbol;Acc:3244]

Genomic region (view in browser)





>retro_ecab_581
GTCTACAGGGTGTATATTTGCCCCTTCTGGTTCCATCTGCTCCTCATCCCCAACAACTGC
AAGATCTTCCAGGGCAAGAAGCAGGACCTCTTCAAAGACATCCAGTCTCTTTCCCCAAAC
CCTGGCCTCAGGAAGCTCACTGACCTGAACAAGTGGGCACGGCTGGCAAGGTCCACGCCT
ACATCATCAGCTCCTTCAAGAAGATGCCTAATGTCTTCGGTAAAGAGAGCAAAAGGAAAG
AATTGGTGGACAACCTGGGGAGACCCACTAGAAGACTGAGTGGGAGCATCGGATGTCCCC
TGGCAACTTTCCAAGACTCCCGCAAGATGCAGGAACTTCCACATATCCAGGACTCCGTAA
AGTGCCAGGCCTTGAAGCTCAAGCTGATGGATGTGATTAATGACATGCTAGCCAATGACA
TTGCCCGGTTGATGGTGATGGTGTGCCAGGAAGAGTCCCTGATGCCCTGCCAGGCTGCAA
AGGGCCGTGCCTTGGACGGCACCGTTAACAGGCTCTTTGGGCACAACTACTGCGAGGGGG
GCGGCAAGGACATTTGATGACACTGAGTGAGTGGTGGACAAGGACAAGCCCACCTAAAAA
GAGCTCTTTTACATGGCTAGTCACCTGTCAACTGCAAGGTCGTGAGTGCCCGTGCCAAGA
AAGAGATGGTGAAGTCCAAGCTGCACGATACCGTGCTGGGGGAGGTCTGGAAGCTGGCTG
ATGTGCACCAGGACAGGCTGCTGGACGATGAGGATTGTGCCCTGGACAGCCACTTCATCA
AAGACAAGCTGGAGGGCGGCAGGCTGCCCAGTGACCTGCCCCAAGACCTGATCACATCTA
AGCAGAGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VIRVYI-GFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLA-KVHAYIISSLKKEMPSVFGKENKKKELVNNLA-EIYGRIEREH
V.RVYI..FW.H.LLIP.N.K.F....QDLF.DIQSL..N..LRKL.DL.K.ARLA.KVHAYIISS.KK.MP.VFGKE.K.KELV.NL..E.....E.EH
Retrocopy
VYRVYICPFWFHLLLIPNNCKIFQGKKQDLFKDIQSLSPNPGLRKLTDLNKWARLA/KVHAYIISSFKK-MPNVFGKESKRKELVDNLG/ETH*KTEWEH


Parental protein
QISPGDFPNV-KKMQDQLQAQDFSKFQPLKSKLLEAVDDMLAHDIAQLMVLVRQEETQRPVQMVKGGAFEGTLHGPFGHGYGEGAGEGI-DDAEWVV-AR
..SPG.FP....KMQ.....QD..K.Q.LK.KL.....DMLA.DIA.LMV.V.QEE...P.Q..KG.A..GT....FGH.Y.EG.G..I.DD.E.VV..R
Retrocopy
RMSPGNFPRL\RKMQELPHIQDSVKCQALKLKLMDVINDMLANDIARLMVMVCQEESLMPCQAAKGRALDGTVNRLFGHNYCEGGGKDI\DDTE*VV\TR


Parental protein
DKPMYDEIFYTL-SPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLLPPSKR
..P.....F..L.SPV..K...A.AKKEMV.SKL...VLG..WKLAD...D..LDDE..AL..H.IK.KLEG..LP..LP..L.....R
Retrocopy
TSPPKKSSFTWL\SPVNCKVVSARAKKEMVKSKLHDTVLGEVWKLADVHQDRLLDDEDCALDSHFIKDKLEGGRLPSDLPQDLITSKQR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide