RetrogeneDB ID:
retro_ecab_582
Organism:
Horse ( Equus_caballus )
Location:
21:39710575-39711448 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.55 %
Coverage:
99.31 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_582
AGACAAAGGAATACTATCCAAGCAAGGGAACAGGACACAACCCCAGAAAAAGGACTAAAT
GAAACAGAAACAGGTGACATACTCAACAAAGAGTTCAAACAAAATATCATAAGGATGCTC
ACAGATATTGGGAGAAGACTGGGATGAACACAGTGAGCTTATCAGCAAAGAACCAGAAGA
TATAAAAAAGAACCAACCAGAAATGAAGAATACAATACTGGAAATGAAAAATTCACTAGA
GGGATTCAATAGTGGAGTAGAGGATGCAGAAGAATGGATCAGCAAGCTAGATGAAAGACT
AGAGGAAATCACCCAAGCTGAACAGAAAAAGGAATTAGACAGAATGAGAAGAGTATAAGG
GAACTCTGGGACAATATCAAGTGTGCTAATTTTCAGATTATAGGTGTCCCAGAAGGAGAA
GAGAGAGACAAAGGGGCAGAAAATTTATTTGAAGAAATAATAGATGAAAAGTTTCCTAAC
CTAAGAACAGACATCCAAGTACAGGAAGCACAGAGAGCTCCAAACAAGATAAGCCCAAAG
AGGCCCACACCAAGACATATTATAATTAAAATGTCCAAAATTAAAGATAAAGAGAGAATC
CTAAAAGCAGCAAGAGAAAGGCCACAAGTGACATACAAAGGGAAGCCCATAAGGCTATCA
GCGGACATCTCAGCTGAGACCCTACAGGTAAGAAGAGAATGACACAACGTATTTAAAGTG
CTAAAAGGAAAATGTCTACAGCCAAGAATACTCTATCCATGAAGGCTGTCATTCAGAATG
GAAGGAGAGAGAAAGTGCTTCCCAGACAAGCAAAAATTAAAGGAGTTTATCACCAAGAAA
CCAGTTCTGGAAGAAACGCTGAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRM-DEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDER
RQR.T.Q..EQD.TPEK.LNETE......K.FKQ.....LTD.GRR..DEHSE...KE.E.IKK.Q.EMKNTI.EMKNSLEG.NS.V.D.EE.ISKLDER
Retrocopy
RQRNTIQAREQDTTPEKGLNETETGDILNKEFKQNIIRMLTDIGRRL\DEHSELISKEPEDIKKNQPEMKNTILEMKNSLEGFNSGVEDAEEWISKLDER


Parental protein
LEEVTQAEQIKEK-MKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
LEE.TQAEQ.KE.......S.R.LWDNIKC....I.GVPE.EE.DKGAE......I.E.FP.L....D.QVQEAQ.APN.I.PKR.TPRHII.K.S....
Retrocopy
LEEITQAEQKKEL/RQNEKSIRELWDNIKCANFQIIGVPEGEERDKGAENLFEEIIDEKFPNLR--TDIQVQEAQRAPNKISPKRPTPRHIIIKMSKI-K


Parental protein
NKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRK-KPPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.KERILKAARER.QVTYKG..IRLSAD.SAETLQ.RR..H..FKVL..K...PRILY..R.SF.MEGE.KCFPDKQKLKEFITKKP.L.E.LKGLI
Retrocopy
DKERILKAARERPQVTYKGKPIRLSADISAETLQVRRE*HNVFKVLKGKCLQPRILYP*RLSFRMEGERKCFPDKQKLKEFITKKPVLEETLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide