RetrogeneDB ID:
retro_ecab_583
Organism:
Horse ( Equus_caballus )
Location:
21:43140287-43140970 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.62 %
Coverage:
65.33 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RNF167
Parental gene aliases:
No gene alias available
Parental gene description:
ring finger protein 167 [Source:HGNC Symbol;Acc:24544]

Genomic region (view in browser)





>retro_ecab_583
CCTGCGGCCTTCCCACTTCCTGTGGTTGCACCCCTGGGCTGTGGGGAGCGGCCCCTACCT
GAGGGCGCTTTGGAGCTGTTTTGGACCACAGTGCCTGCGTGGACTTTGCCGACCTCCCAA
CTCTCTTTGAGGCTGCCTTGAGACAGGAGGGCCGTCAGGGCTTCCTTGTGGAGGCTCACC
CAGCGAATGCCAGCAGCCCCATTGCCCCACCACTCCCAGCCTCCGTCAACGGGTCAGTCT
TTGTTGGGCTGTTTCGAAGATTCGACTCCAACTTTGCCCTCAAGGTCCTATAGGCTCAGA
AGCCTGAGTATGATGCAGCTGTGGCACACAATGTGAATTCCCGTGAACTTCTGAACATGG
GGTGGACTCAGGAGGAAATTCAGCAGCAGATTTGCATCTCATCTGTGTTTATCAGGGAAA
GGAGCACCAAGCGCCTGCGTGCCATTTTGGTCTACCAGAAGGGGGCTCAGGTGCTTCTGG
TCCCAGACAATAGCTTCCTCTTGGGCTGTTGCCTCATCCTTTTTACAGGGATTGTGGGAC
TGCTAATTTTGGCCATGGGAGCAATGGCGCTAGCTCACTGTATCTGGTCCCAGAAGCAGC
TCCAGCAGAATCAATTGACCAAAGAGCAACTGAAACAGCTTCCTACACATGACTATCAGA
AGGGAGACCAGTATGACATCTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 1.66

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PAAFQLPVVV-ATVLWGAAPIRGLIRATSDHNASMDFADLPALFGAALSQEGLQGFLVEAHPANACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNA
PAAF.LPVV.....LWGAAP..G...A..DH.A..DFADLP.LF.AAL.QEG.QGFLVEAHPANA.SPIAPP.PA.VNGSVF..L.RRFD.NF.LKVL.A
Retrocopy
PAAFPLPVVA/TPGLWGAAPT*GRFGAVLDHSACVDFADLPTLFEAALRQEGRQGFLVEAHPANASSPIAPPLPASVNGSVFVGLFRRFDSNFALKVL*A


Parental protein
QKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHRK
QK..Y.AAV.HNVNS.ELLNM.W..EEIQQQI.I.SVFI.ERS...LRA..VY.KGA.VLLVPDNSF.LG..LI.FTGIVGLL.LAMGA.....CI...K
Retrocopy
QKPEYDAAVAHNVNSRELLNMGWTQEEIQQQICISSVFIRERSTKRLRAILVYQKGAQVLLVPDNSFLLGCCLILFTGIVGLLILAMGAMALAHCIWSQK


Parental protein
RLQRNRLTKEQLKQIPTHDYQKGDQYDVC
.LQ.N.LTKEQLKQ.PTHDYQKGDQYD.C
Retrocopy
QLQQNQLTKEQLKQLPTHDYQKGDQYDIC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide