RetrogeneDB ID:
retro_ecab_584
Organism:
Horse ( Equus_caballus )
Location:
22:6607576-6607987 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.54 %
Coverage:
75.14 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_584
AAAACGGTTTGTTACTCACTTGACCCAGAAAACCTTACAAAATCATGCAAATCAAGAAGT
TCAAATCTTCATGTTCACTTTAAGAACACTCGTGAAACTGTGTTCCTCAAGGTTATGCAC
ATCTGAAAAGCCACCAAAGATCTGAAAATGTCACTTTACAAAACAGCGTGTGCCATTCTG
TTATTACAATGGTGGAGTTGGTAGGTGTGCCCAGGCCAAACAGCAGGGCTGGACACGGGG
TTGGTGGCCCAAACAGAGTGCTGAATTTTTACTGCACGAGCTTAAAAATGCAGAGAGTAA
TGCTGAACTTAAGGGTCTGGATACAGATTCTCTGGTTTTGAGCACAGCTGGGTGAACAAA
CCCCCCACGATTCAGCACAGGACACACAGAGCTCCCTGGCAGACCAACCCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.26
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLK-DVTLK-KQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKN
K.V.YSLDPEN.TKSCKSR.SNL.VHFKNTRET....K.MHI.KATK.LK..VTL..KQ.VPF..YNGGVGRCAQAKQ.GWT.G.WPK.SAEFLLH.LKN
Retrocopy
KTVCYSLDPENLTKSCKSRSSNLHVHFKNTRETV-FLKVMHI*KATKDLK/NVTLQ/KQRVPFCYYNGGVGRCAQAKQQGWTRGWWPKQSAEFLLHELKN


Parental protein
AESNAELKGLDVDSLVI-EHIQVNKAPKMRRRTYRAHGRINP
AESNAELKGLD.DSLV..EH..VNK.P....RT.RA....NP
Retrocopy
AESNAELKGLDTDSLVL/EHSWVNKPPTIQHRTHRAPWQTNP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide