RetrogeneDB ID:
retro_ecab_585
Organism:
Horse ( Equus_caballus )
Location:
22:7993932-7994347 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.57 %
Coverage:
98.58 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_585
AACATCGGTCCCTCTTCCTTCAGGCTTGTCATCCAGCAGCTGTTTGACAACAGCAGCATC
CACAACCCCAGAGTGCTTGGCCTCACGGAGGAAACTGAATCCTCACTTCCTGGAGGGTGC
CTGCCATGTCACCAGTGTACGTCTGCAGCTTGGTTACCCACCTGTTGCATCTGTGCCCCA
TTCTATCATCAATGGGTACAAGTGGGTCCTGGCTTTGTCTGAGGGGGCTGATGACACCTT
TCCACTTGCTGAAAAGGGCCAGGCCTTCTTGGCTGATGCATCTGCATTTGTGGCGGCTGC
CCTCATGGCCACTACCCCCACTGGTGCTCCTGCTGCCACTGCAGCTCCAGCCAAGGTTGA
AGCAAAGGAAGCGTGGGAGGAGTCGGACCAGGATATGGGATTTGGCCTCTCTGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NISPFSFGLIIQQVFDNGSIYN-PEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVA
NI.P.SF.L.IQQ.FDN.SI.N.PE.L......L...FLEG...V.SV.LQ.GYP.VASVPHSIINGYK.VLALS...D.TFPLAEK..AFLAD.SAFVA
Retrocopy
NIGPSSFRLVIQQLFDNSSIHN\PECL-ASRRKLNPHFLEGACHVTSVRLQLGYPPVASVPHSIINGYKWVLALSEGADDTFPLAEKGQAFLADASAFVA


Parental protein
AAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD
AA..A...T.APAA.AAPAKVEAKE..EESD.DMGFGL.D
Retrocopy
AALMATTPTGAPAATAAPAKVEAKEAWEESDQDMGFGLSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide