RetrogeneDB ID:
retro_ecab_586
Organism:
Horse ( Equus_caballus )
Location:
22:8247489-8249256 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.28 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
SENP2
Parental gene aliases:
No gene alias available
Parental gene description:
SUMO1/sentrin/SMT3 specific peptidase 2 [Source:HGNC Symbol;Acc:23116]

Genomic region (view in browser)





>retro_ecab_586
ATGTACAAATGGCTGGTTAGGATTCTCGGCACCATTTTCCGTCTCTGTGACCGGCCGGTG
CCCCCTGCCCGGGCCCTCCTGAAGAGGTGGCGCTCGAACAGCACTCTGTTGTCTACAGTG
GACACTGATGAAATACCAGCCAAAAGACCAAGATTAGATTGTTTTATTCACCAAGTGAAA
ACCAGTCTCTACAATGCTGCCGGCTTATTTGGATTCCCATTCCAGCTGAACACAAAGCCC
ATGGTAACTGCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAGAAGAGGTATTTTCA
AACTCCTCATCTTGTGAACTGACAGGTTCTGGATCCTGGAACAACATGCTGAAACTGGGT
AATAAATCTCCTAATGGAATAAGTGACTATCCAGAGATCAGAGTGATAGTAACCCGAGAT
CAGCCTCGCAGAGTCCTGCCTTCCTTTGGTTTTACCTTGAACTCAGAAGGCTATAATAGA
AGACCCGGTGGCCGTTGCCATAGCAAAAGCAATCCAGAGAGTTCCTTAACGTGGAAACCT
CAAGAGCAGGTTGTAACAGAGATGATCTCTGAAGAGGGTGGCAAGGGTCTGAGGCGTCCC
CATTGTACAGTGGAGGAGGGTGTTCAAAAAGAGGAAAGAGAGAAGTACTGGAGGTTATTG
GAGCGACTTAAAGAAGGTGGTCATGGAAACACTGTTCCTCCTGTAACTTCAGCACATCAT
AGTTCTCAAAGAAGTCGCACGGACTCATTAAAGACCAAAGGCTGGGGGGAAGAGCAAAGT
CACAGAGTCAAAACAGCTTAGTTTGTTCCAAAATCATATAGAGTTGTTGAAACAAGGGGA
CCTCTGTGTTCTGTGAGAAGTGAAAAGAGATGTTCAAAGGGGAAAATTTCTGATATAGAG
AAGACAGTTGGAATCAGACTCGAAAATGAAGGTAGGAGAGGACACCAGCTGGAACCTGAC
CTGTCTGAAGAAGTGTCAGCCTGGCTCCGCCTAGGCAGTGGAAGCAATGGCTTACTCAGG
AGGAAGATGTCAATACTTGAGACTAAAGAGAAAAATTGCTCAGGCAGAGACAGGGATAAG
AGGACGGATGATCTTCTTGAACTTACAGAGGACATGGAAAAGGAAATCAGTAATGCCCTA
GGCCATGGCCCTCAGGATGAGATTCTAAGTAGCGCTTTCAAACTCCGAATCACTCGAGGA
GATATCCAGACCTTGAAGAACTATCACTGGCTCAATGACGAAGTCATTAATTTTTACATG
AATCTTCTGGTGGAAAGAAATAAAAAACAAGGGTATCCAGCACTTCATGCATTCAGTACT
TTCTTCTATCCCAAATTAAAGTCTGGGGGTTACCAAGCAGTGAAAAGATGGACCAAAGGG
GTCAATCTCTTTGAACAGGAACTTATTCTGGTGCCTATTCATCGGAAGGTACATTGGAGC
CTGGTGGTGATAGACCTAAGAAAAAAGTGTCTTAAATATCTGGATTCTATGGGACAAAAG
GGCCATAGGATCTGTGAGATTCTCCTTCAGTATTTACAGGAGGAAAGTAAGACCAAAAGA
AATATTGATCCGAATCTTTTAGAGTGGACCCACTACAGCATGAAGCCACATGAGATTCCT
CAACAGGTGAATGGGAGTGATTGTGGAATGTTTACTTGTAAATATGCAGATTATATCTCT
AGGGACAAACCTATCACATTTACTCAGCACCAGATGCCTCTCTTCCGGAAGAAGATGGTG
TGGGAAATCCTTCATCAGCAGTTACTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MYKWLVRILGTIFRLCDRPVPPARALLKRRRSNSTLLSTVDTDEIPAKRPRLDCFIHQVKTSLYNAASLFGFPFQLNTKPMVTAACNGTRNVAPSEEVFS
MYKWLVRILGTIFRLCDRPVPPARALLKR.RSNSTLLSTVDTDEIPAKRPRLDCFIHQVKTSLYNAA.LFGFPFQLNTKPMVTAACNGTRNVAPSEEVFS
Retrocopy
MYKWLVRILGTIFRLCDRPVPPARALLKRWRSNSTLLSTVDTDEIPAKRPRLDCFIHQVKTSLYNAAGLFGFPFQLNTKPMVTAACNGTRNVAPSEEVFS


Parental protein
NSSSCELTGSGSWNNMLKLGNKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGYNRRPGGRRHSKSNPESSLTWKPQEQVVTEMISEEGGKGLRRP
NSSSCELTGSGSWNNMLKLGNKSPNGISDYP.IRV.VTRDQPRRVLPSFGFTLNSEGYNRRPGGR.HSKSNPESSLTWKPQEQVVTEMISEEGGKGLRRP
Retrocopy
NSSSCELTGSGSWNNMLKLGNKSPNGISDYPEIRVIVTRDQPRRVLPSFGFTLNSEGYNRRPGGRCHSKSNPESSLTWKPQEQVVTEMISEEGGKGLRRP


Parental protein
HCTVEEGVQKEEREKYRRLLERLKEGGHGNTVPPVTSAHHSSQRSHTDTLKTKGWGEEQSHGVKTAQFVPKPYRVVETRGPLCSVRSEKRCSKGKISDIE
HCTVEEGVQKEEREKY.RLLERLKEGGHGNTVPPVTSAHHSSQRS.TD.LKTKGWGEEQSH.VKTA.FVPK.YRVVETRGPLCSVRSEKRCSKGKISDIE
Retrocopy
HCTVEEGVQKEEREKYWRLLERLKEGGHGNTVPPVTSAHHSSQRSRTDSLKTKGWGEEQSHRVKTA*FVPKSYRVVETRGPLCSVRSEKRCSKGKISDIE


Parental protein
KTVGIRLENEGRRGHQLEPDLSEEVSARLRLGSGSNGLLRRKMSILETKEKNCSGRDRDKRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRG
KTVGIRLENEGRRGHQLEPDLSEEVSA.LRLGSGSNGLLRRKMSILETKEKNCSGRDRDKRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRG
Retrocopy
KTVGIRLENEGRRGHQLEPDLSEEVSAWLRLGSGSNGLLRRKMSILETKEKNCSGRDRDKRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRG


Parental protein
DIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQK
DIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQK
Retrocopy
DIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVNLFEQELILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQK


Parental protein
GHRICELLLQYLQDESKTKRNIDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
GHRICE.LLQYLQ.ESKTKRNID.NLLEWTHYSMKPHEIPQQ.NGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
Retrocopy
GHRICEILLQYLQEESKTKRNIDPNLLEWTHYSMKPHEIPQQVNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide