RetrogeneDB ID:
retro_ecab_586
Organism:
Horse ( Equus_caballus )
Location:
22:8247489-8249256 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
97.28 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1
Parental gene:
Parental gene symbol:
SENP2
Parental gene aliases:
No gene alias available
Parental gene description:
SUMO1/sentrin/SMT3 specific peptidase 2 [Source:HGNC Symbol;Acc:23116]
Genomic region (view in browser)
>retro_ecab_586
ATGTACAAATGGCTGGTTAGGATTCTCGGCACCATTTTCCGTCTCTGTGACCGGCCGGTG
CCCCCTGCCCGGGCCCTCCTGAAGAGGTGGCGCTCGAACAGCACTCTGTTGTCTACAGTG
GACACTGATGAAATACCAGCCAAAAGACCAAGATTAGATTGTTTTATTCACCAAGTGAAA
ACCAGTCTCTACAATGCTGCCGGCTTATTTGGATTCCCATTCCAGCTGAACACAAAGCCC
ATGGTAACTGCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAGAAGAGGTATTTTCA
AACTCCTCATCTTGTGAACTGACAGGTTCTGGATCCTGGAACAACATGCTGAAACTGGGT
AATAAATCTCCTAATGGAATAAGTGACTATCCAGAGATCAGAGTGATAGTAACCCGAGAT
CAGCCTCGCAGAGTCCTGCCTTCCTTTGGTTTTACCTTGAACTCAGAAGGCTATAATAGA
AGACCCGGTGGCCGTTGCCATAGCAAAAGCAATCCAGAGAGTTCCTTAACGTGGAAACCT
CAAGAGCAGGTTGTAACAGAGATGATCTCTGAAGAGGGTGGCAAGGGTCTGAGGCGTCCC
CATTGTACAGTGGAGGAGGGTGTTCAAAAAGAGGAAAGAGAGAAGTACTGGAGGTTATTG
GAGCGACTTAAAGAAGGTGGTCATGGAAACACTGTTCCTCCTGTAACTTCAGCACATCAT
AGTTCTCAAAGAAGTCGCACGGACTCATTAAAGACCAAAGGCTGGGGGGAAGAGCAAAGT
CACAGAGTCAAAACAGCTTAGTTTGTTCCAAAATCATATAGAGTTGTTGAAACAAGGGGA
CCTCTGTGTTCTGTGAGAAGTGAAAAGAGATGTTCAAAGGGGAAAATTTCTGATATAGAG
AAGACAGTTGGAATCAGACTCGAAAATGAAGGTAGGAGAGGACACCAGCTGGAACCTGAC
CTGTCTGAAGAAGTGTCAGCCTGGCTCCGCCTAGGCAGTGGAAGCAATGGCTTACTCAGG
AGGAAGATGTCAATACTTGAGACTAAAGAGAAAAATTGCTCAGGCAGAGACAGGGATAAG
AGGACGGATGATCTTCTTGAACTTACAGAGGACATGGAAAAGGAAATCAGTAATGCCCTA
GGCCATGGCCCTCAGGATGAGATTCTAAGTAGCGCTTTCAAACTCCGAATCACTCGAGGA
GATATCCAGACCTTGAAGAACTATCACTGGCTCAATGACGAAGTCATTAATTTTTACATG
AATCTTCTGGTGGAAAGAAATAAAAAACAAGGGTATCCAGCACTTCATGCATTCAGTACT
TTCTTCTATCCCAAATTAAAGTCTGGGGGTTACCAAGCAGTGAAAAGATGGACCAAAGGG
GTCAATCTCTTTGAACAGGAACTTATTCTGGTGCCTATTCATCGGAAGGTACATTGGAGC
CTGGTGGTGATAGACCTAAGAAAAAAGTGTCTTAAATATCTGGATTCTATGGGACAAAAG
GGCCATAGGATCTGTGAGATTCTCCTTCAGTATTTACAGGAGGAAAGTAAGACCAAAAGA
AATATTGATCCGAATCTTTTAGAGTGGACCCACTACAGCATGAAGCCACATGAGATTCCT
CAACAGGTGAATGGGAGTGATTGTGGAATGTTTACTTGTAAATATGCAGATTATATCTCT
AGGGACAAACCTATCACATTTACTCAGCACCAGATGCCTCTCTTCCGGAAGAAGATGGTG
TGGGAAATCCTTCATCAGCAGTTACTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.07 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
