RetrogeneDB ID:
retro_ecab_588
Organism:
Horse ( Equus_caballus )
Location:
22:28739532-28739967 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.18 %
Coverage:
60.08 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_588
ATGGTGGTGCAGATTTCCAAGAAGGGGAAGTTTGTTGGTGATGGCATTTTCAGAGCTAAA
CTGAATGAGTTACTCGCTCAGAGACTTGTTGAAGATGGCTACCCTGGAGATGAAGTCTGA
ATTTTACCAACCAGGACAGAAATCATTACCTTGGCTTCCACGATGCAGAATGTTCTTGGT
GAGAAGGACCAGTGGATCTGGGAGTTGGCCAATGAAGGTCAGAAGATCGGCTCCCCTGGG
TGCTGTGTAGAGCTGCATGCTGAAAAGGTGGCCACAATAGGTCTGTGTGCCATTGCCCAG
ACAGAGTCTCTGCATTACAAACTCCTAGGAGGGCTTGCTGTGTGGAGAGCCTGGTATGGG
GTGCTGCAGTTCATCATGGAGAGTGGGGCCAAGGGCTACAAGGTCATGGTGTCAGGGAAA
CTACAAGGACGGCGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIA
M.VQISKK.KFV.DGIF.A.LNE.L...L.EDGY.G.EV...PTRTEII.LA...QNVLGEK...I.EL....QK..G.P...VEL.AEKVAT.GLCAIA
Retrocopy
MVVQISKKGKFVGDGIFRAKLNELLAQRLVEDGYPGDEV*ILPTRTEIITLASTMQNVLGEKDQWIWELANEGQK-IGSPGCCVELHAEKVATIGLCAIA


Parental protein
QAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQR
Q.ESL.YKLLGGLAV.RA.YGVL.FIMESGAKG..V.VSGKL.G.R
Retrocopy
QTESLHYKLLGGLAVWRAWYGVLQFIMESGAKGYKVMVSGKLQGRR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide