RetrogeneDB ID:
retro_ecab_589
Organism:
Horse ( Equus_caballus )
Location:
22:34489900-34490368 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RBM3
Parental gene aliases:
No gene alias available
Parental gene description:
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:9900]

Genomic region (view in browser)





>retro_ecab_589
ATGTCCTCTGAAGAGGGGAAGCTCTTGGCGGGACGGTTCAACTTCCACATCGATGAGTGG
CCTCTGGGAGACCTCTTCAGCAGCTCCGGGCCTCTTTCTGAGGTGGTCATTGCCGAGGAC
CAGGCGACTCAGCAGTCCCAGCGTTTCGGCTTCATCACCTTCACCAATCCAGAGTGGGCC
TCAGACGCCATGAGAGCCCTGAACGGAGAGTCTCTGGATGGTTGCCAGATCCGTGGGGAC
CACGCAGGCAAGTTGGCTCCAGGGGACCGGAAGGGATGCCTAGGGGCTCATGGGTGTCGT
CGCAGCTACTCTAGAGGTGGTGGGGACCAGGGCTATGGGAGTGGCAGGTATGACAGTTGA
CCTGGAGGATATGGATACGGATATGGAAGGTCAGGAGACTATGGTGGCAGAAGTCAGGGT
GGTTATGACTGCTACTCAGGAGGAAATCACAGAGACCGTTACGACAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRG
MSSEEGKL..G..NF..DE..L.D.FSS.GP.SEVV...D..TQ.S..FGFITFTNPE.ASDAMRA.NGESLDG.QIR.DHAGK.A.G.R.G..GAHG..
Retrocopy
MSSEEGKLLAGRFNFHIDEWPLGDLFSSSGPLSEVVIAEDQATQQSQRFGFITFTNPEWASDAMRALNGESLDGCQIRGDHAGKLAPGDRKGCLGAHGCR


Parental protein
RGYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYGGRNQGGYDRYSGGNYRDNYDN
R.YSRGGGDQGYGSGRYDS.PGGYGYGYGRS.DYGGR.QGGYD.YSGGN.RD.YDN
Retrocopy
RSYSRGGGDQGYGSGRYDS*PGGYGYGYGRSGDYGGRSQGGYDCYSGGNHRDRYDN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide