RetrogeneDB ID:
retro_ecab_59
Organism:
Horse ( Equus_caballus )
Location:
29:28371631-28372081 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.52 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CALM2
Parental gene aliases:
CALM2, CALM
Parental gene description:
calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Genomic region (view in browser)





>retro_ecab_59
ATGGCTGATGAGCTGACAGAGGAGCAGGTGGCCGTCTTCAGGGAGGCCTTCGCCCTGTTC
GACAAGGATGGGGATGGCATCATCACCACCCAGGAGCTGGGCACTGTCATGCGGTCCCTA
GGCCAGAGCCCCACAGAGGCCGAGCTACAGGGCATGGTGAGCAAGGTCGACCATGATGGC
AACAGGACCGTGGACTTCCCTGAGTTCCTGGACATGATGGCCAAGAAGATGAAGGACAGG
GACAGTGAGGAAGAGATCCGGGAGGCCTTCCGCATGTTCGACAAGGATGGCAACGGCTTC
ATCAGCACGGCTGAGCTACGGCACATGACAACCAGGCTGGGAGAGAAGCTGACCAAAGAG
GAGGTGGACAAGATGATCCGGGCAGCCGATGTGGATGGGGATGGGCAGGTGAACTATGAG
GAGTTCGTCCGCATGCTGGTCCCCAAGTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.39
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGY
MAD.LTEEQ.A.F.EAF.LFDKDGDG.ITT.ELGTVMRSLGQ.PTEAELQ.M...VD.DGN.T.DFPEFL.MMA.KMKD.DSEEEIREAFR.FDKDGNG.
Retrocopy
MADELTEEQVAVFREAFALFDKDGDGIITTQELGTVMRSLGQSPTEAELQGMVSKVDHDGNRTVDFPEFLDMMAKKMKDRDSEEEIREAFRMFDKDGNGF


Parental protein
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
IS.AELRH..T.LGEKLT.EEVD.MIR.AD.DGDGQVNYEEFV.M...K
Retrocopy
ISTAELRHMTTRLGEKLTKEEVDKMIRAADVDGDGQVNYEEFVRMLVPK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide