RetrogeneDB ID:
retro_ecab_590
Organism:
Horse ( Equus_caballus )
Location:
22:34710421-34711296 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.12 %
Coverage:
99.31 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_590
AGACAAAGGAATCTGTTCCAAGTAAGGCAACAGGAAACACCCCAGAAAAAGAACTAAATG
AAACAGAAGTAAACAATCTACCTGACAAAGAGTTCAAACAAAAAGTCATAAGGATGCTCA
CTGATCTTGGGATAAAAATGTGTGAACTCAGTGAGAACTTCAAAAAAGAATTTGAAAATA
TAAAAAAGAGCCAATCAGAAATGAAGAATACAATACTGGAAATGAAAAATTCACTAGAGA
GACTCAATAGCAGAATAAATGATATAGAAGAACAGATCAGCAAGATGGATGAAAGACTAG
AGGAAATTACCCAAATTGAACAGATAAAAGAATTAAGAAGAATGAGGACAGTCTAAAGAA
CCTCTGGGACAATATCATGCACATTAACATCTGTAGTATAGGTGTCCCAGAAGGAAAAGA
GAGAGACAAAGGGGAAGAGAATCTATTTGAAGAAATAATAGCTGAAAACTTTCCTAACCT
AAGGAAAGAAACAGACATCTAGGTACAGGAAGTGCAGAGAGCACAAAACAAGATAAACCC
AAAGAGGCCCACACCAAGAAACGTTATAATTAAAATGTCAAGAATTAAAGATAAAGAGAG
AATCCTGAAAGCTACAAGAGAAAGCAACAAGAAACATATAAAGGAAACCCCATAAGGCTA
TCAGCTGACTTCTCAGCAGAAATCTTACAGACTAGAAGGAGTATCATGATATATTTAAAG
TGCTGCAAGAAAAAAACCTACAGCCAAGAATACTCTACCCAGCAAGATTATCATTCAGAA
TGGAAGGAGAGAGAAAGAGTTTCCCAGACAAGCAAAAACTAAAGGAGTTTATCACCAAGA
AATCAGCATTACAAGAAATGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQD-KTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDER
RQR..FQV..Q...TPEKELNETE..NLPDK.FKQKV...LTDLG..M.E.SENF.KE.ENIKK.QSEMKNTI.EMKNSLE.LNSR..D.EE.ISK.DER
Retrocopy
RQRNLFQVRQQE/NTPEKELNETEVNNLPDKEFKQKVIRMLTDLGIKMCELSENFKKEFENIKKSQSEMKNTILEMKNSLERLNSRINDIEEQISKMDER


Parental protein
LEEVTQAEQIKEKM-KKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
LEE.TQ.EQIKE...K..DSL..LWDNI....I...GVPE..E.DKG.E......IAENFP.L.KE.D..VQE.Q.A.N.INPKR.TPR..I.K.S....
Retrocopy
LEEITQIEQIKELR/KNEDSLKNLWDNIMHINICSIGVPEGKERDKGEENLFEEIIAENFPNLRKETDI*VQEVQRAQNKINPKRPTPRNVIIKMSRI-K


Parental protein
NKERILKAARE-RQQVTYKGNSIRLSADLSAETLQARR-KWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.KERILKA.RE..QQ.TYKGN.IRLSAD.SAE.LQ.RR...H.IFKVL..K...PRILY.AR.SF.MEGE.K.FPDKQKLKEFITKK.ALQEMLKGLI
Retrocopy
DKERILKATRE/KQQETYKGNPIRLSADFSAEILQTRR/EYHDIFKVLQEKNLQPRILYPARLSFRMEGERKSFPDKQKLKEFITKKSALQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide