RetrogeneDB ID:
retro_ecab_592
Organism:
Horse ( Equus_caballus )
Location:
22:35902831-35903480 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.88 %
Coverage:
74.24 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
RPSA
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_592
TCCGGAGCCCCTGATGTCCTGCAGATGGAGGAGGAGGATGTCCTTGCATTCCTTGCAGCA
GGAACCCAGTTAGGTGGCACCAACCTTGCCTTCCAGATGGAACAGAACATCTGTAAAAGG
AAAAGTGTTGGCATCCACATCATAAATCTGCAGGAACCTGGGAGAAGCTTCTGCTGGCAG
CTCGTGCCATTGTTGCCATTGAAAACCCAGCAGATGTCAGCGTCCCATGCTCCAGGAATG
CGGGCCAGCGGGCTGTGCTGAAGTTTGCTGCTGCTGCTGGCACCGGCTCTGTTGCTGGCC
ACTTCACTCCTGGAACCTTCGCTAACTGGATCCGTGCAGCCTTCTGGGAGCCATGACTTC
TTGTGCTTCCTGATCCCCGGGCTGACCCCAGCCTCTCGCAGAAGTTCTTGTGTTAACCCA
CCTACATTGCTCTGTGTAACACACTCCCCTCTGTGCCATGTGGATGTTGTCCCCATGCAA
CAGGGGAGCTCACTCAGCGGGTCTGATGTGGCAGCTGCTGGCCCTGGACGTTCTGCCCGT
GCGTGGCACCATCTCTGTGCGTGAACACCCACAGGAGGTCACCCCCGATCTCTACTTCTG
CAGACATCCTGAAGAGATGGGAAAGGAAGAGCAGGCCACTGCCGAAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.5
SRP021940_placental_villous 0.36
SRP021940_synovial_membrane 0.31
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKR-TWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIA
SGA.DVLQM.EEDVL.FLAAGT.LGGTNL.FQMEQ.I.KRKS.GI.IINL...TWEKLLLAARAIVAIENPADVSV..SRN.GQRAVLKFAAA.G....A
Retrocopy
SGAPDVLQMEEEDVLAFLAAGTQLGGTNLAFQMEQNICKRKSVGIHIINLQE/TWEKLLLAARAIVAIENPADVSVPCSRNAGQRAVLKFAAAAGTGSVA


Parental protein
GRFTPGTFTNQIQAAFREPRLLVVTDPRAD-HQPLTE-ASYVNLPTIALCNTDSPLRYVDIAIP-CNNKGAHSVGLMWWMLAREVLRMRGTIS-REHPWE
G.FTPGTF.N.I.AAF.EP.LLV..DPRAD..QPL.E..S.VN.PT..LC.T.SPL..VD...P.CN..GAHS.GLMW..LA..VL..RGTIS.REHP.E
Retrocopy
GHFTPGTFANWIRAAFWEP*LLVLPDPRAD/PQPLAE/SSCVNPPTL-LCVTHSPLCHVDV-VP\CN-RGAHSAGLMWQLLALDVLPVRGTISVREHPQE


Parental protein
VMPDLYFYRDPEEIEKEEQAAAEK
V.PDLYF.R.PEE..KEEQA.AE.
Retrocopy
VTPDLYFCRHPEEMGKEEQATAEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide