RetrogeneDB ID:
retro_ecab_593
Organism:
Horse ( Equus_caballus )
Location:
22:27181715-27181967 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
68.6 %
Coverage:
54.55 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
MSRB2
Parental gene aliases:
No gene alias available
Parental gene description:
methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:17061]

Genomic region (view in browser)





>retro_ecab_593
TCTCTCACCAAGAGTGAGCTGCGAAAGAAACGGACTCCAGAGCAACTTCTGTGTCAGGAG
AGAGAAAGGAAGTGACCTGCCTTTTGGTGGGATCTACCTGAGTCACAGGGAGTCAGGAGG
GCATCACTGTGTGTGCTGTGACAGCCTCTCCTCAGTTCTGAGAGAAAGCACGGCTCCGGC
CCTCGATGGCCTTCCTTTTCTGAGGCTCATGGCACGTCTGGCTCTGCTGAAAGTAGCACT
GGGACCCAGAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLAKSEWQKKLTPEQ-FYVTREKGTEPPFSGIYLNNEESGMYHCVCCDS-PLFSSEKKYSSGTGWPSFSEAHGTSGSDESKTGILR
SL.KSE..KK.TPEQ.F.V.REKG...PF.GIYL...ESG..HCVCCDS.PL.SSE.K..SG..WPSFSEAHGTSGS.ES.TG..R
Retrocopy
SLTKSELRKKRTPEQ\FCVRREKGSDLPFGGIYLSHRESGGHHCVCCDS/PLLSSERKHGSGPRWPSFSEAHGTSGSAESSTGTQR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide