RetrogeneDB ID:
retro_ecab_595
Organism:
Horse ( Equus_caballus )
Location:
22:29479100-29479426 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.07 %
Coverage:
96.46 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
DNPH1
Parental gene aliases:
No gene alias available
Parental gene description:
2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [Source:HGNC Symbol;Acc:21218]

Genomic region (view in browser)





>retro_ecab_595
GGGGAAGATGCGGCTCGGGGCCACAAGCTCATGGATGAGCAGGACCTGGCCTGGCTGCAG
CAAGGCAGATGTGGTCATGGCAGAAAGGACCCAGCCATCCTCAGTTGTAAGCTACAGCCT
GGCTCGGCTGTGACTCTCAATAAGCGAACCCTGCGCCCGTTTCGCCCGCGATCTGGGCGA
GAGCTTCCAGCCATGATCGGGGAGCAGCAGAGGGCTCACAGCTCCAGGTGTGGGACTCCA
AAGAGGGATGGCTGCAGGCCATGCTGAGTTGACACTTTGAGGCCGATCCTCCTGAGCAGG
TGGCTGCTTCCCCTGACCCCACCGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GEEAAGGDKLIHERDLAWLQQ-ADVVVAEVTQPSLGVGYELGR-AVALNKRILCLFRPQSGRVLSAMI-RGAADGLRFQVWDYEEGEVEAMLDRYFEADP
GE.AA.G.KL..E.DLAWLQQ.ADVV.AE.TQPS..V.Y.L.R.AV.LNKR.L..FRP.SGR.L.AMI.RGAA.G...QVWD..EG...AML...FEADP
Retrocopy
GEDAARGHKLMDEQDLAWLQQ\ADVVMAERTQPSSVVSYSLAR/AVTLNKRTLRPFRPRSGRELPAMI/RGAAEGSQLQVWDSKEGWLQAMLS*HFEADP


Parental protein
SEEVAASPEPTA
.E.VAASP.PTA
Retrocopy
PEQVAASPDPTA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide