RetrogeneDB ID:
retro_ecab_597
Organism:
Horse ( Equus_caballus )
Location:
22:36264654-36265326 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
68.7 %
Coverage:
86.36 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_597
GAACACCTTACAAACAGTGGAAAAAAGAGAGCCCAAGAAGAAAGTGGTTGATCCATTTCA
AACAAAAGATTGTTATGACGTGAAAGCACCAGCCACGTTCAATATAAGAAATACTGGGAA
CACATTAGTCACAACGCAAGGAACCAAAACTGTCTCTGATGGTCTCAAGGGGTATGCTTC
TGAAATGAGCTTTGCTGATCTACAGAATGCTGAAGTTGCATTTAGAAAATTCAAACTAAT
TACTGAGGACGTCCAGGGCAAAAATCATGTGATCGACATCCATGACATGGATTTCCATGA
CAAAATATGCTCCATGGTCAAAAAATGTCAGACTATGATTGAAGCTGATATTGATGTCAA
GACTACCAATGGTTGCTTTTGTCTATTCCGCATAGGCTTTACTAAAAAATGCAATACTCA
GACCCAAACAACCTCTTATGCTCGGCACCAAGAGGTCCACCAAATACAGAAGATAATGGA
AATCATGATTCAAGAGGCATAGACAAATGACTTTAAAGAAGTGTTCAATAATTTGATTCC
AGACAGATTGGGGAAAACACAGGAAAAGTTTGTTAATCTACTTATCTTCTCCATGATATG
TTTGTGAGAAAAGTAAAAATGCTGAAGAAAATCAAGTTTGGATTGGGAAAACTCACAGAG
CTTCATGGTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KRLTKGGKKGA-KKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDL
..LT..GKK.A.KKKVVDPF..KD.YDVKAPA.FNIRN.G.TLVT.TQGTK..SDGLKG...E.S.ADLQN.EVAFRKFKLITEDVQGKN.....H.MD.
Retrocopy
EHLTNSGKKRA\KKKVVDPFQTKDCYDVKAPATFNIRNTGNTLVT-TQGTKTVSDGLKGYASEMSFADLQNAEVAFRKFKLITEDVQGKNHVIDIHDMDF


Parental protein
TRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIE-KACQSI
..DK.CSMVKK.QTMIEA..DVKTT.G....LF..GFTKK.N.Q...TSYA.HQ.V.QI..K.MEIM..E..TND.KEV.N.LIPD..GK..E.K.C.S.
Retrocopy
-HDKICSMVKKCQTMIEADIDVKTTNGCFC-LFRIGFTKKCNTQTQTTSYARHQEVHQI-QKIMEIMIQEA*TNDFKEVFNNLIPDRLGKTQE/KVC*ST


Parental protein
YPLHDVFVRKVKMLKKPKFELGKLMELHGE
Y.LHD.FVRKVKMLKK.KF.LGKL.ELHGE
Retrocopy
YLLHDMFVRKVKMLKKIKFGLGKLTELHGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide