RetrogeneDB ID:
retro_ecab_598
Organism:
Horse ( Equus_caballus )
Location:
22:40886911-40887162 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
72.94 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
NDUFA3
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa [Source:HGNC Symbol;Acc:7686]

Genomic region (view in browser)





>retro_ecab_598
ATGGCCGCAAGGCCTGTCACCTTCCCCAAGAATGCCTGGGCCAAGGAGCTGGTGCTGGTT
GTGTCCTTTGCCATCTGGGGCCTCGCTGTAAGTCTGCCCACCTCAGCCCCCGCACCAAGT
ACTCCAGCCTGGTCAACAAGGCCACACCCTACAACTACCGAGCGCCCCTCCGAGATGATG
GGAACATGCCCGATGTGCCTAGCCAGCCAGAGCACCCCCAGGGCCCAAGCTTAGAGTGGC
CAAAGAAACTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.26
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAARLAAFLKNAWAKEPVLVASFTIAGLAIILPI-LSPYTKYSIMINKATPYTYPVPLRDDGNMPDVPSHPQDPQGPSLEWLKKL
MAAR...F.KNAWAKE.VLV.SF.I.GLA..LP..LSP.TKYS...NKATPY.Y..PLRDDGNMPDVPS.P..PQGPSLEW.KKL
Retrocopy
MAARPVTFPKNAWAKELVLVVSFAIWGLAVSLPT/LSPRTKYSSLVNKATPYNYRAPLRDDGNMPDVPSQPEHPQGPSLEWPKKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide